Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19705 and RALBFv3_RS19710 are separated by 113 nucleotides RALBFv3_RS19710 and RALBFv3_RS19715 are separated by 74 nucleotides
RALBFv3_RS19705: RALBFv3_RS19705 - ADP-ribose pyrophosphatase, at 1,097,971 to 1,099,008
_RS19705
RALBFv3_RS19710: RALBFv3_RS19710 - MFS transporter, at 1,099,122 to 1,100,441
_RS19710
RALBFv3_RS19715: RALBFv3_RS19715 - endopolygalacturonase, at 1,100,516 to 1,102,576
_RS19715
Position (kb) 1099
1100
1101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1098.428 kb on + strand, within RALBFv3_RS19705 at 1098.494 kb on - strand, within RALBFv3_RS19705 at 1098.557 kb on + strand, within RALBFv3_RS19705 at 1098.638 kb on + strand, within RALBFv3_RS19705 at 1098.638 kb on + strand, within RALBFv3_RS19705 at 1098.753 kb on - strand, within RALBFv3_RS19705 at 1098.997 kb on - strand at 1099.273 kb on + strand, within RALBFv3_RS19710 at 1099.465 kb on + strand, within RALBFv3_RS19710 at 1099.466 kb on - strand, within RALBFv3_RS19710 at 1099.466 kb on - strand, within RALBFv3_RS19710 at 1099.466 kb on - strand, within RALBFv3_RS19710 at 1099.685 kb on - strand, within RALBFv3_RS19710 at 1099.685 kb on - strand, within RALBFv3_RS19710 at 1099.685 kb on - strand, within RALBFv3_RS19710 at 1099.840 kb on + strand, within RALBFv3_RS19710 at 1099.840 kb on + strand, within RALBFv3_RS19710 at 1099.841 kb on - strand, within RALBFv3_RS19710 at 1099.841 kb on - strand, within RALBFv3_RS19710 at 1100.269 kb on + strand, within RALBFv3_RS19710 at 1100.269 kb on + strand, within RALBFv3_RS19710 at 1100.269 kb on + strand, within RALBFv3_RS19710 at 1100.269 kb on + strand, within RALBFv3_RS19710 at 1100.269 kb on + strand, within RALBFv3_RS19710 at 1100.270 kb on - strand, within RALBFv3_RS19710 at 1100.296 kb on + strand, within RALBFv3_RS19710 at 1100.297 kb on - strand, within RALBFv3_RS19710 at 1100.374 kb on + strand at 1100.544 kb on + strand at 1100.544 kb on + strand at 1100.544 kb on + strand at 1100.545 kb on - strand at 1100.545 kb on - strand at 1100.601 kb on + strand at 1100.601 kb on + strand at 1100.602 kb on - strand at 1101.042 kb on + strand, within RALBFv3_RS19715 at 1101.043 kb on - strand, within RALBFv3_RS19715 at 1101.043 kb on - strand, within RALBFv3_RS19715 at 1101.117 kb on + strand, within RALBFv3_RS19715 at 1101.118 kb on - strand, within RALBFv3_RS19715 at 1101.118 kb on - strand, within RALBFv3_RS19715 at 1101.118 kb on - strand, within RALBFv3_RS19715 at 1101.151 kb on - strand, within RALBFv3_RS19715 at 1101.151 kb on - strand, within RALBFv3_RS19715
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,098,428 + RALBFv3_RS19705 0.44 +0.2 1,098,494 - RALBFv3_RS19705 0.50 +0.2 1,098,557 + RALBFv3_RS19705 0.56 +1.6 1,098,638 + RALBFv3_RS19705 0.64 -2.2 1,098,638 + RALBFv3_RS19705 0.64 -1.3 1,098,753 - RALBFv3_RS19705 0.75 -0.4 1,098,997 - -0.5 1,099,273 + RALBFv3_RS19710 0.11 +1.2 1,099,465 + RALBFv3_RS19710 0.26 +0.4 1,099,466 - RALBFv3_RS19710 0.26 -1.1 1,099,466 - RALBFv3_RS19710 0.26 +0.0 1,099,466 - RALBFv3_RS19710 0.26 -0.1 1,099,685 - RALBFv3_RS19710 0.43 -0.2 1,099,685 - RALBFv3_RS19710 0.43 -0.0 1,099,685 - RALBFv3_RS19710 0.43 +0.2 1,099,840 + RALBFv3_RS19710 0.54 +0.0 1,099,840 + RALBFv3_RS19710 0.54 +0.3 1,099,841 - RALBFv3_RS19710 0.54 -0.0 1,099,841 - RALBFv3_RS19710 0.54 +1.2 1,100,269 + RALBFv3_RS19710 0.87 -1.1 1,100,269 + RALBFv3_RS19710 0.87 -0.6 1,100,269 + RALBFv3_RS19710 0.87 +0.0 1,100,269 + RALBFv3_RS19710 0.87 -0.4 1,100,269 + RALBFv3_RS19710 0.87 +2.8 1,100,270 - RALBFv3_RS19710 0.87 +2.2 1,100,296 + RALBFv3_RS19710 0.89 +0.2 1,100,297 - RALBFv3_RS19710 0.89 -0.6 1,100,374 + -0.3 1,100,544 + +0.3 1,100,544 + +0.6 1,100,544 + +0.5 1,100,545 - -0.9 1,100,545 - +0.7 1,100,601 + -0.8 1,100,601 + -1.6 1,100,602 - -0.6 1,101,042 + RALBFv3_RS19715 0.26 -0.2 1,101,043 - RALBFv3_RS19715 0.26 +1.2 1,101,043 - RALBFv3_RS19715 0.26 -1.4 1,101,117 + RALBFv3_RS19715 0.29 -0.6 1,101,118 - RALBFv3_RS19715 0.29 +0.5 1,101,118 - RALBFv3_RS19715 0.29 +0.9 1,101,118 - RALBFv3_RS19715 0.29 -1.4 1,101,151 - RALBFv3_RS19715 0.31 -0.4 1,101,151 - RALBFv3_RS19715 0.31 -0.1
Or see this region's nucleotide sequence