Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18305 and RALBFv3_RS18310 overlap by 4 nucleotides RALBFv3_RS18310 and RALBFv3_RS18315 are separated by 174 nucleotides RALBFv3_RS18315 and RALBFv3_RS18320 are separated by 259 nucleotides
RALBFv3_RS18305: RALBFv3_RS18305 - ABC transporter ATP-binding protein, at 632,548 to 633,285
_RS18305
RALBFv3_RS18310: RALBFv3_RS18310 - molybdate ABC transporter permease subunit, at 633,282 to 633,968
_RS18310
RALBFv3_RS18315: RALBFv3_RS18315 - glutaminase, at 634,143 to 635,057
_RS18315
RALBFv3_RS18320: RALBFv3_RS18320 - LuxR family transcriptional regulator, at 635,317 to 636,357
_RS18320
Position (kb) 634
635
636 Strain fitness (log2 ratio) -2
-1
0
1
2 at 633.421 kb on + strand, within RALBFv3_RS18310 at 633.422 kb on - strand, within RALBFv3_RS18310 at 633.707 kb on + strand, within RALBFv3_RS18310 at 633.707 kb on + strand, within RALBFv3_RS18310 at 633.781 kb on + strand, within RALBFv3_RS18310 at 633.781 kb on + strand, within RALBFv3_RS18310 at 633.781 kb on + strand, within RALBFv3_RS18310 at 633.782 kb on - strand, within RALBFv3_RS18310 at 633.874 kb on + strand, within RALBFv3_RS18310 at 633.874 kb on + strand, within RALBFv3_RS18310 at 633.874 kb on + strand, within RALBFv3_RS18310 at 634.339 kb on + strand, within RALBFv3_RS18315 at 634.495 kb on + strand, within RALBFv3_RS18315 at 634.612 kb on + strand, within RALBFv3_RS18315 at 634.612 kb on + strand, within RALBFv3_RS18315 at 634.612 kb on + strand, within RALBFv3_RS18315 at 634.612 kb on + strand, within RALBFv3_RS18315 at 634.889 kb on + strand, within RALBFv3_RS18315 at 634.982 kb on - strand at 635.050 kb on + strand at 635.051 kb on - strand at 635.051 kb on - strand at 635.637 kb on + strand, within RALBFv3_RS18320 at 635.669 kb on - strand, within RALBFv3_RS18320 at 635.677 kb on + strand, within RALBFv3_RS18320 at 635.677 kb on + strand, within RALBFv3_RS18320 at 635.678 kb on - strand, within RALBFv3_RS18320 at 635.695 kb on + strand, within RALBFv3_RS18320 at 635.696 kb on - strand, within RALBFv3_RS18320 at 635.696 kb on - strand, within RALBFv3_RS18320 at 635.696 kb on - strand, within RALBFv3_RS18320 at 635.728 kb on + strand, within RALBFv3_RS18320
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 633,421 + RALBFv3_RS18310 0.20 -0.0 633,422 - RALBFv3_RS18310 0.20 -1.9 633,707 + RALBFv3_RS18310 0.62 -0.7 633,707 + RALBFv3_RS18310 0.62 -0.4 633,781 + RALBFv3_RS18310 0.73 +1.1 633,781 + RALBFv3_RS18310 0.73 -0.6 633,781 + RALBFv3_RS18310 0.73 +0.8 633,782 - RALBFv3_RS18310 0.73 +2.3 633,874 + RALBFv3_RS18310 0.86 -1.1 633,874 + RALBFv3_RS18310 0.86 +0.3 633,874 + RALBFv3_RS18310 0.86 -1.0 634,339 + RALBFv3_RS18315 0.21 -1.3 634,495 + RALBFv3_RS18315 0.38 -0.4 634,612 + RALBFv3_RS18315 0.51 -0.6 634,612 + RALBFv3_RS18315 0.51 -1.1 634,612 + RALBFv3_RS18315 0.51 -0.7 634,612 + RALBFv3_RS18315 0.51 -0.0 634,889 + RALBFv3_RS18315 0.82 +0.7 634,982 - -1.6 635,050 + +0.2 635,051 - +0.8 635,051 - -0.7 635,637 + RALBFv3_RS18320 0.31 -1.3 635,669 - RALBFv3_RS18320 0.34 +1.3 635,677 + RALBFv3_RS18320 0.35 +0.3 635,677 + RALBFv3_RS18320 0.35 -0.1 635,678 - RALBFv3_RS18320 0.35 +0.6 635,695 + RALBFv3_RS18320 0.36 -0.8 635,696 - RALBFv3_RS18320 0.36 -0.8 635,696 - RALBFv3_RS18320 0.36 -1.2 635,696 - RALBFv3_RS18320 0.36 -0.3 635,728 + RALBFv3_RS18320 0.39 -2.3
Or see this region's nucleotide sequence