Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17855 and RALBFv3_RS17860 are separated by 83 nucleotides RALBFv3_RS17860 and RALBFv3_RS17865 are separated by 2 nucleotides RALBFv3_RS17865 and RALBFv3_RS17870 are separated by 78 nucleotides
RALBFv3_RS17855: RALBFv3_RS17855 - ornithine aminotransferase, at 509,627 to 512,167
_RS17855
RALBFv3_RS17860: RALBFv3_RS17860 - NAD(P)-dependent oxidoreductase, at 512,251 to 512,961
_RS17860
RALBFv3_RS17865: RALBFv3_RS17865 - DeoR/GlpR transcriptional regulator, at 512,964 to 513,728
_RS17865
RALBFv3_RS17870: RALBFv3_RS17870 - glycosyl hydrolase, at 513,807 to 514,985
_RS17870
Position (kb) 512
513 Strain fitness (log2 ratio) -1
0
1
2 at 511.427 kb on + strand, within RALBFv3_RS17855 at 511.776 kb on - strand, within RALBFv3_RS17855 at 511.907 kb on + strand, within RALBFv3_RS17855 at 512.165 kb on + strand at 512.165 kb on + strand at 512.165 kb on + strand at 512.253 kb on - strand at 513.166 kb on + strand, within RALBFv3_RS17865 at 513.574 kb on + strand, within RALBFv3_RS17865 at 513.575 kb on - strand, within RALBFv3_RS17865 at 513.841 kb on + strand at 513.862 kb on + strand at 513.862 kb on + strand at 513.863 kb on - strand at 513.863 kb on - strand at 513.863 kb on - strand at 513.863 kb on - strand at 513.920 kb on - strand at 513.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 511,427 + RALBFv3_RS17855 0.71 -1.0 511,776 - RALBFv3_RS17855 0.85 -0.7 511,907 + RALBFv3_RS17855 0.90 -1.5 512,165 + -0.5 512,165 + +0.0 512,165 + -1.0 512,253 - -1.3 513,166 + RALBFv3_RS17865 0.26 +1.2 513,574 + RALBFv3_RS17865 0.80 -0.7 513,575 - RALBFv3_RS17865 0.80 -0.0 513,841 + -0.2 513,862 + +0.7 513,862 + +0.5 513,863 - +0.5 513,863 - +2.3 513,863 - +1.3 513,863 - -1.6 513,920 - -0.2 513,920 - +1.0
Or see this region's nucleotide sequence