Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17380 and RALBFv3_RS17385 are separated by 49 nucleotides RALBFv3_RS17385 and RALBFv3_RS17390 are separated by 16 nucleotides
RALBFv3_RS17380: RALBFv3_RS17380 - motility protein MotB, at 391,217 to 392,194
_RS17380
RALBFv3_RS17385: RALBFv3_RS17385 - response regulator, at 392,244 to 392,657
_RS17385
RALBFv3_RS17390: RALBFv3_RS17390 - chemotaxis protein CheA, at 392,674 to 394,848
_RS17390
Position (kb) 392
393 Strain fitness (log2 ratio) -1
0
1 at 391.400 kb on + strand, within RALBFv3_RS17380 at 391.401 kb on - strand, within RALBFv3_RS17380 at 391.547 kb on - strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.833 kb on - strand, within RALBFv3_RS17380 at 391.833 kb on - strand, within RALBFv3_RS17380 at 392.476 kb on - strand, within RALBFv3_RS17385 at 392.656 kb on - strand at 392.656 kb on - strand at 393.025 kb on + strand, within RALBFv3_RS17390 at 393.025 kb on + strand, within RALBFv3_RS17390 at 393.025 kb on + strand, within RALBFv3_RS17390 at 393.026 kb on - strand, within RALBFv3_RS17390 at 393.026 kb on - strand, within RALBFv3_RS17390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 391,400 + RALBFv3_RS17380 0.19 +1.0 391,401 - RALBFv3_RS17380 0.19 -1.1 391,547 - RALBFv3_RS17380 0.34 -1.6 391,742 + RALBFv3_RS17380 0.54 +0.3 391,742 + RALBFv3_RS17380 0.54 -0.5 391,742 + RALBFv3_RS17380 0.54 +0.7 391,742 + RALBFv3_RS17380 0.54 +1.0 391,742 + RALBFv3_RS17380 0.54 -0.2 391,743 - RALBFv3_RS17380 0.54 +0.8 391,743 - RALBFv3_RS17380 0.54 +0.5 391,743 - RALBFv3_RS17380 0.54 +0.4 391,833 - RALBFv3_RS17380 0.63 -1.2 391,833 - RALBFv3_RS17380 0.63 +1.4 392,476 - RALBFv3_RS17385 0.56 -1.0 392,656 - -1.6 392,656 - +0.0 393,025 + RALBFv3_RS17390 0.16 -0.1 393,025 + RALBFv3_RS17390 0.16 +1.4 393,025 + RALBFv3_RS17390 0.16 -0.1 393,026 - RALBFv3_RS17390 0.16 -0.2 393,026 - RALBFv3_RS17390 0.16 +0.7
Or see this region's nucleotide sequence