Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17370 and RALBFv3_RS17375 are separated by 457 nucleotides RALBFv3_RS17375 and RALBFv3_RS17380 are separated by 77 nucleotides
RALBFv3_RS17370: RALBFv3_RS17370 - flagellar transcriptional regulator FlhC, at 389,261 to 389,821
_RS17370
RALBFv3_RS17375: RALBFv3_RS17375 - flagellar motor stator protein MotA, at 390,279 to 391,139
_RS17375
RALBFv3_RS17380: RALBFv3_RS17380 - motility protein MotB, at 391,217 to 392,194
_RS17380
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 389.390 kb on + strand, within RALBFv3_RS17370 at 389.390 kb on + strand, within RALBFv3_RS17370 at 389.390 kb on + strand, within RALBFv3_RS17370 at 389.391 kb on - strand, within RALBFv3_RS17370 at 389.391 kb on - strand, within RALBFv3_RS17370 at 389.391 kb on - strand, within RALBFv3_RS17370 at 389.499 kb on - strand, within RALBFv3_RS17370 at 389.499 kb on - strand, within RALBFv3_RS17370 at 389.555 kb on + strand, within RALBFv3_RS17370 at 389.556 kb on - strand, within RALBFv3_RS17370 at 389.565 kb on - strand, within RALBFv3_RS17370 at 389.723 kb on + strand, within RALBFv3_RS17370 at 389.724 kb on - strand, within RALBFv3_RS17370 at 389.724 kb on - strand, within RALBFv3_RS17370 at 389.724 kb on - strand, within RALBFv3_RS17370 at 389.724 kb on - strand, within RALBFv3_RS17370 at 389.830 kb on - strand at 389.937 kb on + strand at 389.937 kb on + strand at 389.938 kb on - strand at 389.938 kb on - strand at 389.979 kb on + strand at 389.980 kb on - strand at 390.136 kb on + strand at 390.156 kb on + strand at 390.157 kb on - strand at 390.157 kb on - strand at 390.243 kb on + strand at 390.243 kb on + strand at 390.243 kb on + strand at 390.243 kb on + strand at 390.244 kb on - strand at 390.244 kb on - strand at 390.246 kb on - strand at 390.283 kb on + strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.297 kb on + strand at 390.298 kb on - strand at 390.298 kb on - strand at 390.330 kb on + strand at 390.330 kb on + strand at 390.331 kb on - strand at 390.486 kb on + strand, within RALBFv3_RS17375 at 390.486 kb on + strand, within RALBFv3_RS17375 at 390.487 kb on - strand, within RALBFv3_RS17375 at 390.487 kb on - strand, within RALBFv3_RS17375 at 390.501 kb on + strand, within RALBFv3_RS17375 at 390.502 kb on - strand, within RALBFv3_RS17375 at 390.502 kb on - strand, within RALBFv3_RS17375 at 390.526 kb on - strand, within RALBFv3_RS17375 at 390.526 kb on - strand, within RALBFv3_RS17375 at 390.616 kb on - strand, within RALBFv3_RS17375 at 390.616 kb on - strand, within RALBFv3_RS17375 at 390.616 kb on - strand, within RALBFv3_RS17375 at 390.663 kb on + strand, within RALBFv3_RS17375 at 390.663 kb on + strand, within RALBFv3_RS17375 at 390.927 kb on + strand, within RALBFv3_RS17375 at 391.032 kb on + strand, within RALBFv3_RS17375 at 391.138 kb on - strand at 391.169 kb on + strand at 391.195 kb on + strand at 391.196 kb on - strand at 391.400 kb on + strand, within RALBFv3_RS17380 at 391.401 kb on - strand, within RALBFv3_RS17380 at 391.547 kb on - strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.833 kb on - strand, within RALBFv3_RS17380 at 391.833 kb on - strand, within RALBFv3_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 389,390 + RALBFv3_RS17370 0.23 +0.4 389,390 + RALBFv3_RS17370 0.23 -0.0 389,390 + RALBFv3_RS17370 0.23 +1.0 389,391 - RALBFv3_RS17370 0.23 -0.2 389,391 - RALBFv3_RS17370 0.23 -0.3 389,391 - RALBFv3_RS17370 0.23 +1.2 389,499 - RALBFv3_RS17370 0.42 -0.6 389,499 - RALBFv3_RS17370 0.42 +1.0 389,555 + RALBFv3_RS17370 0.52 -0.3 389,556 - RALBFv3_RS17370 0.53 -0.4 389,565 - RALBFv3_RS17370 0.54 +0.3 389,723 + RALBFv3_RS17370 0.82 -0.0 389,724 - RALBFv3_RS17370 0.83 +1.0 389,724 - RALBFv3_RS17370 0.83 -0.3 389,724 - RALBFv3_RS17370 0.83 +0.7 389,724 - RALBFv3_RS17370 0.83 -0.2 389,830 - -0.2 389,937 + -0.1 389,937 + +0.9 389,938 - -1.4 389,938 - +0.7 389,979 + +2.7 389,980 - +1.0 390,136 + -0.1 390,156 + +0.4 390,157 - -0.0 390,157 - -0.3 390,243 + -0.3 390,243 + +2.0 390,243 + -0.6 390,243 + -1.3 390,244 - +0.3 390,244 - -0.7 390,246 - +0.9 390,283 + -0.1 390,284 - +0.2 390,284 - -2.1 390,284 - +0.6 390,297 + +2.8 390,298 - +1.4 390,298 - -0.0 390,330 + -0.6 390,330 + +0.8 390,331 - -0.5 390,486 + RALBFv3_RS17375 0.24 -0.1 390,486 + RALBFv3_RS17375 0.24 +1.4 390,487 - RALBFv3_RS17375 0.24 +1.4 390,487 - RALBFv3_RS17375 0.24 -1.0 390,501 + RALBFv3_RS17375 0.26 +1.4 390,502 - RALBFv3_RS17375 0.26 +0.2 390,502 - RALBFv3_RS17375 0.26 -0.9 390,526 - RALBFv3_RS17375 0.29 +0.4 390,526 - RALBFv3_RS17375 0.29 -0.5 390,616 - RALBFv3_RS17375 0.39 +0.5 390,616 - RALBFv3_RS17375 0.39 +1.4 390,616 - RALBFv3_RS17375 0.39 +0.4 390,663 + RALBFv3_RS17375 0.45 +0.6 390,663 + RALBFv3_RS17375 0.45 -0.2 390,927 + RALBFv3_RS17375 0.75 -1.1 391,032 + RALBFv3_RS17375 0.87 -0.4 391,138 - -1.1 391,169 + +0.0 391,195 + +2.0 391,196 - +0.1 391,400 + RALBFv3_RS17380 0.19 +1.0 391,401 - RALBFv3_RS17380 0.19 -1.1 391,547 - RALBFv3_RS17380 0.34 -1.6 391,742 + RALBFv3_RS17380 0.54 +0.3 391,742 + RALBFv3_RS17380 0.54 -0.5 391,742 + RALBFv3_RS17380 0.54 +0.7 391,742 + RALBFv3_RS17380 0.54 +1.0 391,742 + RALBFv3_RS17380 0.54 -0.2 391,743 - RALBFv3_RS17380 0.54 +0.8 391,743 - RALBFv3_RS17380 0.54 +0.5 391,743 - RALBFv3_RS17380 0.54 +0.4 391,833 - RALBFv3_RS17380 0.63 -1.2 391,833 - RALBFv3_RS17380 0.63 +1.4
Or see this region's nucleotide sequence