Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24230 and RALBFv3_RS17000 overlap by 23 nucleotides RALBFv3_RS17000 and RALBFv3_RS17005 are separated by 139 nucleotides RALBFv3_RS17005 and RALBFv3_RS17010 are separated by 73 nucleotides RALBFv3_RS17010 and RALBFv3_RS17015 are separated by 163 nucleotides
RALBFv3_RS24230: RALBFv3_RS24230 - hypothetical protein, at 301,149 to 301,595
_RS24230
RALBFv3_RS17000: RALBFv3_RS17000 - hypothetical protein, at 301,573 to 302,130
_RS17000
RALBFv3_RS17005: RALBFv3_RS17005 - hypothetical protein, at 302,270 to 302,857
_RS17005
RALBFv3_RS17010: RALBFv3_RS17010 - DUF1801 domain-containing protein, at 302,931 to 303,317
_RS17010
RALBFv3_RS17015: RALBFv3_RS17015 - pyruvate kinase, at 303,481 to 304,899
_RS17015
Position (kb) 302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.334 kb on + strand, within RALBFv3_RS24230 at 301.335 kb on - strand, within RALBFv3_RS24230 at 301.335 kb on - strand, within RALBFv3_RS24230 at 301.348 kb on - strand, within RALBFv3_RS24230 at 301.348 kb on - strand, within RALBFv3_RS24230 at 301.348 kb on - strand, within RALBFv3_RS24230 at 301.348 kb on - strand, within RALBFv3_RS24230 at 301.440 kb on - strand, within RALBFv3_RS24230 at 301.443 kb on + strand, within RALBFv3_RS24230 at 301.444 kb on - strand, within RALBFv3_RS24230 at 301.518 kb on + strand, within RALBFv3_RS24230 at 301.520 kb on + strand, within RALBFv3_RS24230 at 301.530 kb on + strand, within RALBFv3_RS24230 at 301.531 kb on - strand, within RALBFv3_RS24230 at 301.592 kb on - strand at 301.592 kb on - strand at 301.782 kb on + strand, within RALBFv3_RS17000 at 301.782 kb on + strand, within RALBFv3_RS17000 at 301.823 kb on + strand, within RALBFv3_RS17000 at 301.919 kb on - strand, within RALBFv3_RS17000 at 301.920 kb on + strand, within RALBFv3_RS17000 at 301.931 kb on + strand, within RALBFv3_RS17000 at 301.998 kb on + strand, within RALBFv3_RS17000 at 301.999 kb on - strand, within RALBFv3_RS17000 at 302.023 kb on + strand, within RALBFv3_RS17000 at 302.023 kb on + strand, within RALBFv3_RS17000 at 302.128 kb on + strand at 302.129 kb on - strand at 302.139 kb on + strand at 302.139 kb on + strand at 302.140 kb on - strand at 302.140 kb on - strand at 302.191 kb on + strand at 302.191 kb on + strand at 302.191 kb on + strand at 302.192 kb on - strand at 302.192 kb on - strand at 302.213 kb on + strand at 302.225 kb on - strand at 302.260 kb on + strand at 302.260 kb on + strand at 302.261 kb on - strand at 302.261 kb on - strand at 302.261 kb on - strand at 302.276 kb on + strand at 302.276 kb on + strand at 302.276 kb on + strand at 302.276 kb on + strand at 302.312 kb on + strand at 302.312 kb on + strand at 302.354 kb on + strand, within RALBFv3_RS17005 at 302.354 kb on + strand, within RALBFv3_RS17005 at 302.354 kb on + strand, within RALBFv3_RS17005 at 302.354 kb on + strand, within RALBFv3_RS17005 at 302.355 kb on - strand, within RALBFv3_RS17005 at 302.355 kb on - strand, within RALBFv3_RS17005 at 302.355 kb on - strand, within RALBFv3_RS17005 at 302.357 kb on + strand, within RALBFv3_RS17005 at 302.358 kb on - strand, within RALBFv3_RS17005 at 302.497 kb on + strand, within RALBFv3_RS17005 at 302.498 kb on - strand, within RALBFv3_RS17005 at 302.543 kb on + strand, within RALBFv3_RS17005 at 302.544 kb on - strand, within RALBFv3_RS17005 at 302.544 kb on - strand, within RALBFv3_RS17005 at 302.544 kb on - strand, within RALBFv3_RS17005 at 302.544 kb on - strand, within RALBFv3_RS17005 at 302.615 kb on + strand, within RALBFv3_RS17005 at 302.629 kb on + strand, within RALBFv3_RS17005 at 302.630 kb on + strand, within RALBFv3_RS17005 at 302.746 kb on + strand, within RALBFv3_RS17005 at 302.747 kb on + strand, within RALBFv3_RS17005 at 302.747 kb on + strand, within RALBFv3_RS17005 at 302.747 kb on + strand, within RALBFv3_RS17005 at 302.747 kb on + strand, within RALBFv3_RS17005 at 302.748 kb on - strand, within RALBFv3_RS17005 at 302.748 kb on - strand, within RALBFv3_RS17005 at 302.799 kb on + strand at 302.800 kb on - strand at 302.800 kb on - strand at 302.800 kb on - strand at 302.882 kb on + strand at 302.883 kb on - strand at 303.112 kb on + strand, within RALBFv3_RS17010 at 303.112 kb on + strand, within RALBFv3_RS17010 at 303.113 kb on - strand, within RALBFv3_RS17010 at 303.113 kb on - strand, within RALBFv3_RS17010 at 303.449 kb on - strand at 303.756 kb on - strand, within RALBFv3_RS17015 at 303.771 kb on - strand, within RALBFv3_RS17015
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 301,334 + RALBFv3_RS24230 0.41 +0.3 301,335 - RALBFv3_RS24230 0.42 -0.7 301,335 - RALBFv3_RS24230 0.42 +1.5 301,348 - RALBFv3_RS24230 0.45 -0.2 301,348 - RALBFv3_RS24230 0.45 -0.5 301,348 - RALBFv3_RS24230 0.45 -1.5 301,348 - RALBFv3_RS24230 0.45 +1.3 301,440 - RALBFv3_RS24230 0.65 -1.1 301,443 + RALBFv3_RS24230 0.66 +1.5 301,444 - RALBFv3_RS24230 0.66 +0.4 301,518 + RALBFv3_RS24230 0.83 -0.5 301,520 + RALBFv3_RS24230 0.83 +0.5 301,530 + RALBFv3_RS24230 0.85 +0.5 301,531 - RALBFv3_RS24230 0.85 +1.5 301,592 - -0.2 301,592 - -0.5 301,782 + RALBFv3_RS17000 0.37 +1.4 301,782 + RALBFv3_RS17000 0.37 -0.8 301,823 + RALBFv3_RS17000 0.45 +1.2 301,919 - RALBFv3_RS17000 0.62 -1.5 301,920 + RALBFv3_RS17000 0.62 +1.1 301,931 + RALBFv3_RS17000 0.64 -0.8 301,998 + RALBFv3_RS17000 0.76 +1.5 301,999 - RALBFv3_RS17000 0.76 +0.1 302,023 + RALBFv3_RS17000 0.81 +0.3 302,023 + RALBFv3_RS17000 0.81 -1.0 302,128 + +1.0 302,129 - +1.0 302,139 + -1.4 302,139 + +0.2 302,140 - -0.3 302,140 - -0.5 302,191 + -1.2 302,191 + +0.5 302,191 + -0.5 302,192 - +1.2 302,192 - -0.3 302,213 + +0.3 302,225 - +0.9 302,260 + +0.2 302,260 + +0.4 302,261 - -1.1 302,261 - -1.5 302,261 - -2.3 302,276 + -0.5 302,276 + +0.5 302,276 + -1.1 302,276 + +0.1 302,312 + +0.1 302,312 + -0.2 302,354 + RALBFv3_RS17005 0.14 -0.3 302,354 + RALBFv3_RS17005 0.14 -1.1 302,354 + RALBFv3_RS17005 0.14 -1.3 302,354 + RALBFv3_RS17005 0.14 -1.1 302,355 - RALBFv3_RS17005 0.14 -0.1 302,355 - RALBFv3_RS17005 0.14 +0.6 302,355 - RALBFv3_RS17005 0.14 +2.5 302,357 + RALBFv3_RS17005 0.15 -1.3 302,358 - RALBFv3_RS17005 0.15 -2.4 302,497 + RALBFv3_RS17005 0.39 +0.7 302,498 - RALBFv3_RS17005 0.39 +1.5 302,543 + RALBFv3_RS17005 0.46 -0.5 302,544 - RALBFv3_RS17005 0.47 +0.5 302,544 - RALBFv3_RS17005 0.47 -1.0 302,544 - RALBFv3_RS17005 0.47 -0.7 302,544 - RALBFv3_RS17005 0.47 +1.4 302,615 + RALBFv3_RS17005 0.59 +2.1 302,629 + RALBFv3_RS17005 0.61 +0.7 302,630 + RALBFv3_RS17005 0.61 -0.5 302,746 + RALBFv3_RS17005 0.81 -0.2 302,747 + RALBFv3_RS17005 0.81 -0.4 302,747 + RALBFv3_RS17005 0.81 -1.0 302,747 + RALBFv3_RS17005 0.81 +0.5 302,747 + RALBFv3_RS17005 0.81 +0.2 302,748 - RALBFv3_RS17005 0.81 +0.7 302,748 - RALBFv3_RS17005 0.81 +1.5 302,799 + +0.2 302,800 - -0.7 302,800 - -1.8 302,800 - +0.7 302,882 + -1.7 302,883 - -2.0 303,112 + RALBFv3_RS17010 0.47 -0.5 303,112 + RALBFv3_RS17010 0.47 -0.9 303,113 - RALBFv3_RS17010 0.47 -0.9 303,113 - RALBFv3_RS17010 0.47 -0.6 303,449 - -1.1 303,756 - RALBFv3_RS17015 0.19 +0.1 303,771 - RALBFv3_RS17015 0.20 -1.3
Or see this region's nucleotide sequence