Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16745

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16740 and RALBFv3_RS16745 overlap by 4 nucleotidesRALBFv3_RS16745 and RALBFv3_RS16750 are separated by 14 nucleotidesRALBFv3_RS16750 and RALBFv3_RS16755 are separated by 17 nucleotides RALBFv3_RS16740: RALBFv3_RS16740 - nitrate reductase subunit alpha, at 230,915 to 234,652 _RS16740 RALBFv3_RS16745: RALBFv3_RS16745 - nitrate reductase subunit beta, at 234,649 to 236,202 _RS16745 RALBFv3_RS16750: RALBFv3_RS16750 - nitrate reductase molybdenum cofactor assembly chaperone, at 236,217 to 236,885 _RS16750 RALBFv3_RS16755: RALBFv3_RS16755 - respiratory nitrate reductase subunit gamma, at 236,903 to 237,586 _RS16755 Position (kb) 234 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2 3at 233.975 kb on + strand, within RALBFv3_RS16740at 233.975 kb on + strand, within RALBFv3_RS16740at 233.976 kb on - strand, within RALBFv3_RS16740at 233.988 kb on - strand, within RALBFv3_RS16740at 233.989 kb on + strand, within RALBFv3_RS16740at 233.989 kb on + strand, within RALBFv3_RS16740at 233.989 kb on + strand, within RALBFv3_RS16740at 233.990 kb on - strand, within RALBFv3_RS16740at 233.990 kb on - strand, within RALBFv3_RS16740at 233.990 kb on - strand, within RALBFv3_RS16740at 234.044 kb on + strand, within RALBFv3_RS16740at 234.045 kb on - strand, within RALBFv3_RS16740at 234.045 kb on - strand, within RALBFv3_RS16740at 234.045 kb on - strand, within RALBFv3_RS16740at 234.212 kb on + strand, within RALBFv3_RS16740at 234.395 kb on + strandat 234.396 kb on - strandat 234.512 kb on + strandat 234.513 kb on - strandat 234.513 kb on - strandat 234.528 kb on - strandat 234.539 kb on + strandat 234.539 kb on + strandat 234.540 kb on - strandat 234.540 kb on - strandat 234.540 kb on - strandat 234.543 kb on - strandat 234.708 kb on + strandat 234.947 kb on - strand, within RALBFv3_RS16745at 234.947 kb on - strand, within RALBFv3_RS16745at 234.949 kb on + strand, within RALBFv3_RS16745at 234.950 kb on - strand, within RALBFv3_RS16745at 234.952 kb on - strand, within RALBFv3_RS16745at 234.964 kb on + strand, within RALBFv3_RS16745at 234.964 kb on + strand, within RALBFv3_RS16745at 234.965 kb on - strand, within RALBFv3_RS16745at 234.965 kb on - strand, within RALBFv3_RS16745at 234.970 kb on + strand, within RALBFv3_RS16745at 234.971 kb on - strand, within RALBFv3_RS16745at 235.150 kb on + strand, within RALBFv3_RS16745at 235.150 kb on + strand, within RALBFv3_RS16745at 235.150 kb on + strand, within RALBFv3_RS16745at 235.151 kb on - strand, within RALBFv3_RS16745at 235.151 kb on - strand, within RALBFv3_RS16745at 235.151 kb on - strand, within RALBFv3_RS16745at 235.180 kb on + strand, within RALBFv3_RS16745at 235.181 kb on - strand, within RALBFv3_RS16745at 235.181 kb on - strand, within RALBFv3_RS16745at 235.249 kb on + strand, within RALBFv3_RS16745at 235.250 kb on - strand, within RALBFv3_RS16745at 235.250 kb on - strand, within RALBFv3_RS16745at 235.331 kb on - strand, within RALBFv3_RS16745at 235.331 kb on - strand, within RALBFv3_RS16745at 235.331 kb on - strand, within RALBFv3_RS16745at 235.331 kb on - strand, within RALBFv3_RS16745at 235.343 kb on - strand, within RALBFv3_RS16745at 235.450 kb on + strand, within RALBFv3_RS16745at 235.451 kb on - strand, within RALBFv3_RS16745at 235.468 kb on + strand, within RALBFv3_RS16745at 235.522 kb on + strand, within RALBFv3_RS16745at 235.522 kb on + strand, within RALBFv3_RS16745at 235.522 kb on + strand, within RALBFv3_RS16745at 235.523 kb on - strand, within RALBFv3_RS16745at 235.523 kb on - strand, within RALBFv3_RS16745at 235.637 kb on - strand, within RALBFv3_RS16745at 235.684 kb on + strand, within RALBFv3_RS16745at 235.685 kb on - strand, within RALBFv3_RS16745at 235.708 kb on + strand, within RALBFv3_RS16745at 235.708 kb on + strand, within RALBFv3_RS16745at 235.709 kb on - strand, within RALBFv3_RS16745at 235.709 kb on - strand, within RALBFv3_RS16745at 235.709 kb on - strand, within RALBFv3_RS16745at 235.811 kb on - strand, within RALBFv3_RS16745at 235.888 kb on + strand, within RALBFv3_RS16745at 235.888 kb on + strand, within RALBFv3_RS16745at 235.888 kb on + strand, within RALBFv3_RS16745at 235.888 kb on + strand, within RALBFv3_RS16745at 235.889 kb on - strand, within RALBFv3_RS16745at 235.976 kb on - strand, within RALBFv3_RS16745at 235.976 kb on - strand, within RALBFv3_RS16745at 235.976 kb on - strand, within RALBFv3_RS16745at 235.999 kb on + strand, within RALBFv3_RS16745at 236.000 kb on - strand, within RALBFv3_RS16745at 236.000 kb on - strand, within RALBFv3_RS16745at 236.000 kb on - strand, within RALBFv3_RS16745at 236.400 kb on + strand, within RALBFv3_RS16750at 236.400 kb on + strand, within RALBFv3_RS16750at 236.400 kb on + strand, within RALBFv3_RS16750at 236.400 kb on + strand, within RALBFv3_RS16750at 236.401 kb on - strand, within RALBFv3_RS16750at 236.401 kb on - strand, within RALBFv3_RS16750at 236.401 kb on - strand, within RALBFv3_RS16750at 236.439 kb on + strand, within RALBFv3_RS16750at 236.439 kb on + strand, within RALBFv3_RS16750at 236.439 kb on + strand, within RALBFv3_RS16750at 236.517 kb on + strand, within RALBFv3_RS16750at 236.517 kb on + strand, within RALBFv3_RS16750at 236.517 kb on + strand, within RALBFv3_RS16750at 236.517 kb on + strand, within RALBFv3_RS16750at 236.518 kb on - strand, within RALBFv3_RS16750at 236.518 kb on - strand, within RALBFv3_RS16750at 236.518 kb on - strand, within RALBFv3_RS16750at 236.932 kb on + strandat 236.933 kb on - strandat 236.936 kb on + strandat 236.936 kb on + strandat 236.936 kb on + strandat 236.937 kb on - strandat 236.937 kb on - strandat 236.941 kb on + strandat 236.942 kb on + strandat 236.942 kb on + strandat 236.942 kb on + strandat 236.943 kb on - strandat 236.943 kb on - strandat 236.944 kb on - strandat 236.999 kb on + strand, within RALBFv3_RS16755at 236.999 kb on + strand, within RALBFv3_RS16755

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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233,975 + RALBFv3_RS16740 0.82 -0.8
233,975 + RALBFv3_RS16740 0.82 -1.7
233,976 - RALBFv3_RS16740 0.82 -0.3
233,988 - RALBFv3_RS16740 0.82 -0.0
233,989 + RALBFv3_RS16740 0.82 +0.1
233,989 + RALBFv3_RS16740 0.82 -1.0
233,989 + RALBFv3_RS16740 0.82 +1.9
233,990 - RALBFv3_RS16740 0.82 +0.7
233,990 - RALBFv3_RS16740 0.82 +0.1
233,990 - RALBFv3_RS16740 0.82 -0.3
234,044 + RALBFv3_RS16740 0.84 +1.2
234,045 - RALBFv3_RS16740 0.84 +0.9
234,045 - RALBFv3_RS16740 0.84 +0.5
234,045 - RALBFv3_RS16740 0.84 +0.4
234,212 + RALBFv3_RS16740 0.88 -0.1
234,395 + -0.8
234,396 - -0.1
234,512 + -0.2
234,513 - -1.4
234,513 - -0.1
234,528 - -0.1
234,539 + +1.5
234,539 + +0.5
234,540 - +1.5
234,540 - -0.1
234,540 - +0.0
234,543 - +1.5
234,708 + +0.5
234,947 - RALBFv3_RS16745 0.19 +3.5
234,947 - RALBFv3_RS16745 0.19 +0.9
234,949 + RALBFv3_RS16745 0.19 +2.0
234,950 - RALBFv3_RS16745 0.19 -0.6
234,952 - RALBFv3_RS16745 0.19 +2.3
234,964 + RALBFv3_RS16745 0.20 -1.3
234,964 + RALBFv3_RS16745 0.20 -0.2
234,965 - RALBFv3_RS16745 0.20 +0.5
234,965 - RALBFv3_RS16745 0.20 -0.9
234,970 + RALBFv3_RS16745 0.21 -0.1
234,971 - RALBFv3_RS16745 0.21 -1.7
235,150 + RALBFv3_RS16745 0.32 -0.2
235,150 + RALBFv3_RS16745 0.32 +0.7
235,150 + RALBFv3_RS16745 0.32 -0.5
235,151 - RALBFv3_RS16745 0.32 -1.1
235,151 - RALBFv3_RS16745 0.32 +2.2
235,151 - RALBFv3_RS16745 0.32 -1.3
235,180 + RALBFv3_RS16745 0.34 -0.4
235,181 - RALBFv3_RS16745 0.34 -0.3
235,181 - RALBFv3_RS16745 0.34 +0.0
235,249 + RALBFv3_RS16745 0.39 +0.2
235,250 - RALBFv3_RS16745 0.39 -0.4
235,250 - RALBFv3_RS16745 0.39 +2.1
235,331 - RALBFv3_RS16745 0.44 -0.7
235,331 - RALBFv3_RS16745 0.44 -0.7
235,331 - RALBFv3_RS16745 0.44 +0.5
235,331 - RALBFv3_RS16745 0.44 +1.1
235,343 - RALBFv3_RS16745 0.45 +1.1
235,450 + RALBFv3_RS16745 0.52 +0.4
235,451 - RALBFv3_RS16745 0.52 +0.5
235,468 + RALBFv3_RS16745 0.53 -1.1
235,522 + RALBFv3_RS16745 0.56 -0.0
235,522 + RALBFv3_RS16745 0.56 +1.7
235,522 + RALBFv3_RS16745 0.56 +0.3
235,523 - RALBFv3_RS16745 0.56 -1.3
235,523 - RALBFv3_RS16745 0.56 +0.4
235,637 - RALBFv3_RS16745 0.64 -0.7
235,684 + RALBFv3_RS16745 0.67 +0.3
235,685 - RALBFv3_RS16745 0.67 +0.2
235,708 + RALBFv3_RS16745 0.68 +1.1
235,708 + RALBFv3_RS16745 0.68 +0.6
235,709 - RALBFv3_RS16745 0.68 +0.8
235,709 - RALBFv3_RS16745 0.68 +1.4
235,709 - RALBFv3_RS16745 0.68 -0.5
235,811 - RALBFv3_RS16745 0.75 -0.2
235,888 + RALBFv3_RS16745 0.80 +0.9
235,888 + RALBFv3_RS16745 0.80 -0.2
235,888 + RALBFv3_RS16745 0.80 +0.5
235,888 + RALBFv3_RS16745 0.80 -0.5
235,889 - RALBFv3_RS16745 0.80 -0.5
235,976 - RALBFv3_RS16745 0.85 -0.3
235,976 - RALBFv3_RS16745 0.85 +0.5
235,976 - RALBFv3_RS16745 0.85 -1.5
235,999 + RALBFv3_RS16745 0.87 -1.5
236,000 - RALBFv3_RS16745 0.87 +0.2
236,000 - RALBFv3_RS16745 0.87 +0.7
236,000 - RALBFv3_RS16745 0.87 -1.3
236,400 + RALBFv3_RS16750 0.27 -0.1
236,400 + RALBFv3_RS16750 0.27 -0.0
236,400 + RALBFv3_RS16750 0.27 -1.4
236,400 + RALBFv3_RS16750 0.27 -0.5
236,401 - RALBFv3_RS16750 0.28 -0.6
236,401 - RALBFv3_RS16750 0.28 +2.2
236,401 - RALBFv3_RS16750 0.28 +2.1
236,439 + RALBFv3_RS16750 0.33 -1.8
236,439 + RALBFv3_RS16750 0.33 -0.0
236,439 + RALBFv3_RS16750 0.33 -0.3
236,517 + RALBFv3_RS16750 0.45 -1.3
236,517 + RALBFv3_RS16750 0.45 -0.2
236,517 + RALBFv3_RS16750 0.45 -0.5
236,517 + RALBFv3_RS16750 0.45 +0.1
236,518 - RALBFv3_RS16750 0.45 +1.5
236,518 - RALBFv3_RS16750 0.45 +0.2
236,518 - RALBFv3_RS16750 0.45 +0.5
236,932 + +2.8
236,933 - +0.5
236,936 + -0.3
236,936 + +0.2
236,936 + -0.0
236,937 - +0.7
236,937 - +1.1
236,941 + -1.8
236,942 + -1.5
236,942 + -0.8
236,942 + +3.7
236,943 - -0.4
236,943 - +1.2
236,944 - +1.7
236,999 + RALBFv3_RS16755 0.14 +0.5
236,999 + RALBFv3_RS16755 0.14 +1.0

Or see this region's nucleotide sequence