Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04480 and RALBFv3_RS23680 are separated by 11 nucleotides RALBFv3_RS23680 and RALBFv3_RS04485 overlap by 23 nucleotides RALBFv3_RS04485 and RALBFv3_RS04490 overlap by 4 nucleotides
RALBFv3_RS04480: RALBFv3_RS04480 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,006,281 to 1,007,348
_RS04480
RALBFv3_RS23680: RALBFv3_RS23680 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,007,360 to 1,007,566
_RS23680
RALBFv3_RS04485: RALBFv3_RS04485 - ABC transporter ATP-binding protein, at 1,007,544 to 1,008,380
_RS04485
RALBFv3_RS04490: RALBFv3_RS04490 - iron ABC transporter permease, at 1,008,377 to 1,009,384
_RS04490
Position (kb) 1007
1008
1009 Strain fitness (log2 ratio) -1
0
1
2 at 1006.821 kb on - strand, within RALBFv3_RS04480 at 1007.251 kb on - strand at 1007.251 kb on - strand at 1007.422 kb on + strand, within RALBFv3_RS23680 at 1007.494 kb on + strand, within RALBFv3_RS23680 at 1007.495 kb on - strand, within RALBFv3_RS23680 at 1007.841 kb on + strand, within RALBFv3_RS04485 at 1008.300 kb on - strand at 1008.651 kb on + strand, within RALBFv3_RS04490 at 1008.651 kb on + strand, within RALBFv3_RS04490 at 1008.652 kb on - strand, within RALBFv3_RS04490 at 1008.874 kb on + strand, within RALBFv3_RS04490 at 1009.102 kb on - strand, within RALBFv3_RS04490 at 1009.102 kb on - strand, within RALBFv3_RS04490 at 1009.102 kb on - strand, within RALBFv3_RS04490 at 1009.102 kb on - strand, within RALBFv3_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,006,821 - RALBFv3_RS04480 0.51 +0.6 1,007,251 - +0.6 1,007,251 - +0.8 1,007,422 + RALBFv3_RS23680 0.30 +0.9 1,007,494 + RALBFv3_RS23680 0.65 +1.7 1,007,495 - RALBFv3_RS23680 0.65 -1.1 1,007,841 + RALBFv3_RS04485 0.35 -1.4 1,008,300 - +0.0 1,008,651 + RALBFv3_RS04490 0.27 -1.2 1,008,651 + RALBFv3_RS04490 0.27 +0.6 1,008,652 - RALBFv3_RS04490 0.27 +0.9 1,008,874 + RALBFv3_RS04490 0.49 +0.0 1,009,102 - RALBFv3_RS04490 0.72 +2.2 1,009,102 - RALBFv3_RS04490 0.72 -0.2 1,009,102 - RALBFv3_RS04490 0.72 -1.6 1,009,102 - RALBFv3_RS04490 0.72 -0.7
Or see this region's nucleotide sequence