Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03390 and RALBFv3_RS03395 are separated by 296 nucleotides RALBFv3_RS03395 and RALBFv3_RS03400 are separated by 317 nucleotides RALBFv3_RS03400 and RALBFv3_RS03405 are separated by 34 nucleotides
RALBFv3_RS03390: RALBFv3_RS03390 - hemagglutinin-related protein, at 737,498 to 739,828
_RS03390
RALBFv3_RS03395: RALBFv3_RS03395 - filamentous hemagglutinin, at 740,125 to 750,345
_RS03395
RALBFv3_RS03400: RALBFv3_RS03400 - DUF2968 domain-containing protein, at 750,663 to 751,295
_RS03400
RALBFv3_RS03405: RALBFv3_RS03405 - pyroglutamyl-peptidase I, at 751,330 to 751,977
_RS03405
Position (kb) 740
741
742
743
744
745
746
747
748
749
750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 739.885 kb on + strand at 740.348 kb on - strand at 740.363 kb on + strand at 740.364 kb on - strand at 740.364 kb on - strand at 740.429 kb on + strand at 740.429 kb on + strand at 740.569 kb on + strand at 740.604 kb on + strand at 740.635 kb on + strand at 740.635 kb on + strand at 740.636 kb on - strand at 740.636 kb on - strand at 740.876 kb on + strand at 740.909 kb on + strand at 740.909 kb on + strand at 741.044 kb on + strand at 741.101 kb on + strand at 741.101 kb on + strand at 741.101 kb on + strand at 741.106 kb on - strand at 741.148 kb on + strand, within RALBFv3_RS03395 at 741.148 kb on + strand, within RALBFv3_RS03395 at 741.148 kb on + strand, within RALBFv3_RS03395 at 741.148 kb on + strand, within RALBFv3_RS03395 at 741.307 kb on + strand, within RALBFv3_RS03395 at 741.307 kb on + strand, within RALBFv3_RS03395 at 741.327 kb on + strand, within RALBFv3_RS03395 at 741.328 kb on - strand, within RALBFv3_RS03395 at 742.458 kb on - strand, within RALBFv3_RS03395 at 743.484 kb on + strand, within RALBFv3_RS03395 at 743.681 kb on - strand, within RALBFv3_RS03395 at 744.216 kb on + strand, within RALBFv3_RS03395 at 744.591 kb on - strand, within RALBFv3_RS03395 at 744.591 kb on - strand, within RALBFv3_RS03395 at 744.791 kb on + strand, within RALBFv3_RS03395 at 744.825 kb on - strand, within RALBFv3_RS03395 at 746.400 kb on + strand, within RALBFv3_RS03395 at 746.750 kb on + strand, within RALBFv3_RS03395 at 746.833 kb on - strand, within RALBFv3_RS03395 at 747.093 kb on + strand, within RALBFv3_RS03395 at 747.094 kb on - strand, within RALBFv3_RS03395 at 747.094 kb on - strand, within RALBFv3_RS03395 at 747.140 kb on + strand, within RALBFv3_RS03395 at 747.141 kb on - strand, within RALBFv3_RS03395 at 747.318 kb on + strand, within RALBFv3_RS03395 at 747.318 kb on + strand, within RALBFv3_RS03395 at 748.008 kb on + strand, within RALBFv3_RS03395 at 748.069 kb on - strand, within RALBFv3_RS03395 at 748.304 kb on + strand, within RALBFv3_RS03395 at 748.304 kb on + strand, within RALBFv3_RS03395 at 749.468 kb on + strand at 749.468 kb on + strand at 749.468 kb on + strand at 749.743 kb on - strand at 750.023 kb on + strand at 750.023 kb on + strand at 750.024 kb on - strand at 750.147 kb on - strand at 750.430 kb on + strand at 750.626 kb on + strand at 750.626 kb on + strand at 750.627 kb on - strand at 750.628 kb on + strand at 750.629 kb on - strand at 750.629 kb on - strand at 750.852 kb on + strand, within RALBFv3_RS03400 at 750.907 kb on - strand, within RALBFv3_RS03400 at 750.907 kb on - strand, within RALBFv3_RS03400 at 750.907 kb on - strand, within RALBFv3_RS03400 at 750.921 kb on + strand, within RALBFv3_RS03400 at 750.922 kb on - strand, within RALBFv3_RS03400 at 750.982 kb on - strand, within RALBFv3_RS03400 at 750.982 kb on - strand, within RALBFv3_RS03400 at 751.210 kb on - strand, within RALBFv3_RS03400 at 751.210 kb on - strand, within RALBFv3_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 739,885 + +0.8 740,348 - -2.8 740,363 + -0.1 740,364 - +1.5 740,364 - -0.3 740,429 + -1.1 740,429 + -0.4 740,569 + +0.5 740,604 + +0.2 740,635 + -0.5 740,635 + -1.7 740,636 - -1.2 740,636 - -0.4 740,876 + -0.5 740,909 + -0.0 740,909 + +0.3 741,044 + +0.2 741,101 + -0.5 741,101 + -0.6 741,101 + +1.0 741,106 - +2.0 741,148 + RALBFv3_RS03395 0.10 -0.2 741,148 + RALBFv3_RS03395 0.10 +0.1 741,148 + RALBFv3_RS03395 0.10 -0.9 741,148 + RALBFv3_RS03395 0.10 -0.7 741,307 + RALBFv3_RS03395 0.12 -0.4 741,307 + RALBFv3_RS03395 0.12 +0.0 741,327 + RALBFv3_RS03395 0.12 -0.6 741,328 - RALBFv3_RS03395 0.12 -0.5 742,458 - RALBFv3_RS03395 0.23 -0.9 743,484 + RALBFv3_RS03395 0.33 -0.6 743,681 - RALBFv3_RS03395 0.35 -0.3 744,216 + RALBFv3_RS03395 0.40 -0.5 744,591 - RALBFv3_RS03395 0.44 +1.7 744,591 - RALBFv3_RS03395 0.44 -0.5 744,791 + RALBFv3_RS03395 0.46 +0.9 744,825 - RALBFv3_RS03395 0.46 +0.1 746,400 + RALBFv3_RS03395 0.61 +0.1 746,750 + RALBFv3_RS03395 0.65 -2.0 746,833 - RALBFv3_RS03395 0.66 -0.6 747,093 + RALBFv3_RS03395 0.68 +1.5 747,094 - RALBFv3_RS03395 0.68 -2.3 747,094 - RALBFv3_RS03395 0.68 +2.1 747,140 + RALBFv3_RS03395 0.69 +1.1 747,141 - RALBFv3_RS03395 0.69 +1.5 747,318 + RALBFv3_RS03395 0.70 +1.1 747,318 + RALBFv3_RS03395 0.70 +0.5 748,008 + RALBFv3_RS03395 0.77 -0.8 748,069 - RALBFv3_RS03395 0.78 -0.5 748,304 + RALBFv3_RS03395 0.80 +0.5 748,304 + RALBFv3_RS03395 0.80 +0.5 749,468 + -0.5 749,468 + -0.2 749,468 + +0.1 749,743 - -0.1 750,023 + +0.2 750,023 + -0.2 750,024 - +1.3 750,147 - -0.5 750,430 + +0.2 750,626 + +1.2 750,626 + +2.1 750,627 - +0.9 750,628 + +0.4 750,629 - -1.7 750,629 - +0.9 750,852 + RALBFv3_RS03400 0.30 +0.7 750,907 - RALBFv3_RS03400 0.39 +0.3 750,907 - RALBFv3_RS03400 0.39 -1.1 750,907 - RALBFv3_RS03400 0.39 -1.9 750,921 + RALBFv3_RS03400 0.41 -0.5 750,922 - RALBFv3_RS03400 0.41 +0.5 750,982 - RALBFv3_RS03400 0.50 +1.6 750,982 - RALBFv3_RS03400 0.50 -1.7 751,210 - RALBFv3_RS03400 0.86 +0.9 751,210 - RALBFv3_RS03400 0.86 +0.4
Or see this region's nucleotide sequence