Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31275 and AZOBR_RS31280 are separated by 306 nucleotides AZOBR_RS31280 and AZOBR_RS31290 are separated by 773 nucleotides
AZOBR_RS31275: AZOBR_RS31275 - altronate oxidoreductase, at 382,694 to 384,199
_RS31275
AZOBR_RS31280: AZOBR_RS31280 - hypothetical protein, at 384,506 to 385,237
_RS31280
AZOBR_RS31290: AZOBR_RS31290 - hypothetical protein, at 386,011 to 387,285
_RS31290
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.774 kb on + strand, within AZOBR_RS31275 at 383.774 kb on + strand, within AZOBR_RS31275 at 383.774 kb on + strand, within AZOBR_RS31275 at 383.775 kb on - strand, within AZOBR_RS31275 at 383.856 kb on - strand, within AZOBR_RS31275 at 383.856 kb on - strand, within AZOBR_RS31275 at 383.910 kb on + strand, within AZOBR_RS31275 at 383.911 kb on - strand, within AZOBR_RS31275 at 383.921 kb on + strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 384.207 kb on - strand at 384.207 kb on - strand at 384.226 kb on - strand at 384.288 kb on + strand at 384.358 kb on - strand at 384.360 kb on - strand at 384.361 kb on + strand at 384.564 kb on - strand at 384.564 kb on - strand at 384.564 kb on - strand at 384.564 kb on - strand at 384.647 kb on + strand, within AZOBR_RS31280 at 384.725 kb on + strand, within AZOBR_RS31280 at 384.725 kb on + strand, within AZOBR_RS31280 at 384.725 kb on + strand, within AZOBR_RS31280 at 384.995 kb on + strand, within AZOBR_RS31280 at 384.996 kb on - strand, within AZOBR_RS31280 at 384.996 kb on - strand, within AZOBR_RS31280 at 385.095 kb on - strand, within AZOBR_RS31280 at 385.095 kb on - strand, within AZOBR_RS31280 at 385.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 383,774 + AZOBR_RS31275 0.72 +2.3 383,774 + AZOBR_RS31275 0.72 -1.9 383,774 + AZOBR_RS31275 0.72 -0.4 383,775 - AZOBR_RS31275 0.72 -0.2 383,856 - AZOBR_RS31275 0.77 +0.5 383,856 - AZOBR_RS31275 0.77 +1.0 383,910 + AZOBR_RS31275 0.81 +0.6 383,911 - AZOBR_RS31275 0.81 +1.7 383,921 + AZOBR_RS31275 0.81 +0.5 383,922 - AZOBR_RS31275 0.82 -3.0 383,922 - AZOBR_RS31275 0.82 +0.6 383,922 - AZOBR_RS31275 0.82 -0.3 383,922 - AZOBR_RS31275 0.82 -0.4 383,922 - AZOBR_RS31275 0.82 -2.3 383,922 - AZOBR_RS31275 0.82 -0.1 384,207 - -1.0 384,207 - +1.6 384,226 - +0.1 384,288 + -0.6 384,358 - +1.0 384,360 - +1.7 384,361 + +2.2 384,564 - -2.7 384,564 - +2.7 384,564 - +0.0 384,564 - +0.9 384,647 + AZOBR_RS31280 0.19 +2.7 384,725 + AZOBR_RS31280 0.30 -0.8 384,725 + AZOBR_RS31280 0.30 -0.5 384,725 + AZOBR_RS31280 0.30 +0.3 384,995 + AZOBR_RS31280 0.67 -1.3 384,996 - AZOBR_RS31280 0.67 +0.2 384,996 - AZOBR_RS31280 0.67 -1.2 385,095 - AZOBR_RS31280 0.80 +0.4 385,095 - AZOBR_RS31280 0.80 -1.2 385,698 + -0.0
Or see this region's nucleotide sequence