Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31255

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31250 and AZOBR_RS31255 are separated by 8 nucleotidesAZOBR_RS31255 and AZOBR_RS31260 are separated by 111 nucleotides AZOBR_RS31250: AZOBR_RS31250 - ABC transporter permease, at 375,941 to 377,152 _RS31250 AZOBR_RS31255: AZOBR_RS31255 - galactose 1-dehydrogenase, at 377,161 to 378,138 _RS31255 AZOBR_RS31260: AZOBR_RS31260 - dihydroxy-acid dehydratase, at 378,250 to 380,076 _RS31260 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1at 376.658 kb on + strand, within AZOBR_RS31250at 376.658 kb on + strand, within AZOBR_RS31250at 376.658 kb on + strand, within AZOBR_RS31250at 376.658 kb on + strand, within AZOBR_RS31250at 376.658 kb on + strand, within AZOBR_RS31250at 376.659 kb on - strandat 376.659 kb on - strand, within AZOBR_RS31250at 376.659 kb on - strand, within AZOBR_RS31250at 376.733 kb on + strand, within AZOBR_RS31250at 376.734 kb on - strand, within AZOBR_RS31250at 376.734 kb on - strand, within AZOBR_RS31250at 376.841 kb on + strand, within AZOBR_RS31250at 377.132 kb on + strandat 377.132 kb on + strandat 377.133 kb on - strandat 377.133 kb on - strandat 377.923 kb on - strand, within AZOBR_RS31255at 378.004 kb on + strand, within AZOBR_RS31255at 378.004 kb on + strand, within AZOBR_RS31255at 378.016 kb on + strand, within AZOBR_RS31255at 378.017 kb on - strand, within AZOBR_RS31255at 378.136 kb on + strandat 378.136 kb on + strandat 378.359 kb on - strandat 378.359 kb on - strandat 378.359 kb on - strandat 378.371 kb on - strandat 378.994 kb on + strand, within AZOBR_RS31260at 378.995 kb on - strand, within AZOBR_RS31260at 378.995 kb on - strand, within AZOBR_RS31260

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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376,658 + AZOBR_RS31250 0.59 -1.1
376,658 + AZOBR_RS31250 0.59 -1.9
376,658 + AZOBR_RS31250 0.59 -0.0
376,658 + AZOBR_RS31250 0.59 +1.0
376,658 + AZOBR_RS31250 0.59 +0.7
376,659 - +0.7
376,659 - AZOBR_RS31250 0.59 +0.4
376,659 - AZOBR_RS31250 0.59 -0.7
376,733 + AZOBR_RS31250 0.65 +0.2
376,734 - AZOBR_RS31250 0.65 -0.3
376,734 - AZOBR_RS31250 0.65 -1.8
376,841 + AZOBR_RS31250 0.74 +0.5
377,132 + -0.7
377,132 + -1.5
377,133 - -0.9
377,133 - -0.1
377,923 - AZOBR_RS31255 0.78 -0.0
378,004 + AZOBR_RS31255 0.86 +0.4
378,004 + AZOBR_RS31255 0.86 -0.1
378,016 + AZOBR_RS31255 0.87 +0.6
378,017 - AZOBR_RS31255 0.88 +0.2
378,136 + +1.4
378,136 + -2.0
378,359 - -0.1
378,359 - +0.4
378,359 - +0.4
378,371 - +0.0
378,994 + AZOBR_RS31260 0.41 +0.0
378,995 - AZOBR_RS31260 0.41 +1.7
378,995 - AZOBR_RS31260 0.41 +0.1

Or see this region's nucleotide sequence