Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31125

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31120 and AZOBR_RS31125 are separated by 70 nucleotidesAZOBR_RS31125 and AZOBR_RS31130 are separated by 79 nucleotides AZOBR_RS31120: AZOBR_RS31120 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 345,819 to 347,123 _RS31120 AZOBR_RS31125: AZOBR_RS31125 - biotin synthase, at 347,194 to 348,117 _RS31125 AZOBR_RS31130: AZOBR_RS31130 - membrane protein, at 348,197 to 348,904 _RS31130 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 346.248 kb on + strand, within AZOBR_RS31120at 346.249 kb on - strand, within AZOBR_RS31120at 346.249 kb on - strand, within AZOBR_RS31120at 346.300 kb on - strand, within AZOBR_RS31120at 346.344 kb on + strand, within AZOBR_RS31120at 346.956 kb on + strand, within AZOBR_RS31120at 347.035 kb on + strandat 347.035 kb on + strandat 347.036 kb on - strandat 347.037 kb on + strandat 347.038 kb on - strandat 347.038 kb on - strandat 347.038 kb on - strandat 347.038 kb on - strandat 347.038 kb on - strandat 347.085 kb on + strandat 347.383 kb on + strand, within AZOBR_RS31125at 347.632 kb on + strand, within AZOBR_RS31125at 347.632 kb on + strand, within AZOBR_RS31125at 347.633 kb on - strand, within AZOBR_RS31125at 347.633 kb on - strand, within AZOBR_RS31125at 347.635 kb on + strand, within AZOBR_RS31125at 347.636 kb on - strand, within AZOBR_RS31125at 347.636 kb on - strand, within AZOBR_RS31125at 347.636 kb on - strand, within AZOBR_RS31125at 347.636 kb on - strand, within AZOBR_RS31125at 347.636 kb on - strand, within AZOBR_RS31125at 347.636 kb on - strand, within AZOBR_RS31125at 347.668 kb on + strand, within AZOBR_RS31125at 347.669 kb on - strand, within AZOBR_RS31125at 347.669 kb on - strand, within AZOBR_RS31125at 347.959 kb on + strand, within AZOBR_RS31125at 348.043 kb on + strandat 348.044 kb on - strandat 348.044 kb on - strandat 348.233 kb on + strandat 348.233 kb on + strandat 348.234 kb on - strandat 348.234 kb on - strandat 348.234 kb on - strandat 348.269 kb on + strand, within AZOBR_RS31130at 348.270 kb on - strand, within AZOBR_RS31130at 348.270 kb on - strand, within AZOBR_RS31130at 348.434 kb on + strand, within AZOBR_RS31130at 348.575 kb on + strand, within AZOBR_RS31130at 348.575 kb on + strand, within AZOBR_RS31130at 348.575 kb on + strand, within AZOBR_RS31130at 348.602 kb on + strand, within AZOBR_RS31130at 348.603 kb on - strand, within AZOBR_RS31130at 348.603 kb on - strand, within AZOBR_RS31130at 348.638 kb on + strand, within AZOBR_RS31130at 348.639 kb on - strand, within AZOBR_RS31130at 348.639 kb on - strand, within AZOBR_RS31130at 348.671 kb on + strand, within AZOBR_RS31130at 348.671 kb on + strand, within AZOBR_RS31130at 348.672 kb on - strand, within AZOBR_RS31130at 348.672 kb on - strand, within AZOBR_RS31130at 348.987 kb on - strandat 348.987 kb on - strandat 348.987 kb on - strandat 349.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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346,248 + AZOBR_RS31120 0.33 +0.5
346,249 - AZOBR_RS31120 0.33 -0.3
346,249 - AZOBR_RS31120 0.33 -1.3
346,300 - AZOBR_RS31120 0.37 +2.7
346,344 + AZOBR_RS31120 0.40 -0.6
346,956 + AZOBR_RS31120 0.87 -1.9
347,035 + +0.4
347,035 + -0.5
347,036 - -0.9
347,037 + +0.1
347,038 - -0.1
347,038 - -1.2
347,038 - +0.1
347,038 - -1.7
347,038 - -0.1
347,085 + +1.4
347,383 + AZOBR_RS31125 0.20 -0.3
347,632 + AZOBR_RS31125 0.47 -1.0
347,632 + AZOBR_RS31125 0.47 +0.9
347,633 - AZOBR_RS31125 0.48 -0.3
347,633 - AZOBR_RS31125 0.48 -0.2
347,635 + AZOBR_RS31125 0.48 -0.7
347,636 - AZOBR_RS31125 0.48 +0.3
347,636 - AZOBR_RS31125 0.48 -1.7
347,636 - AZOBR_RS31125 0.48 +0.4
347,636 - AZOBR_RS31125 0.48 +0.1
347,636 - AZOBR_RS31125 0.48 -0.1
347,636 - AZOBR_RS31125 0.48 +1.4
347,668 + AZOBR_RS31125 0.51 -1.9
347,669 - AZOBR_RS31125 0.51 -1.7
347,669 - AZOBR_RS31125 0.51 -1.6
347,959 + AZOBR_RS31125 0.83 -0.5
348,043 + +0.1
348,044 - +0.7
348,044 - -0.6
348,233 + -0.2
348,233 + +0.9
348,234 - +1.1
348,234 - +0.2
348,234 - +0.1
348,269 + AZOBR_RS31130 0.10 +1.2
348,270 - AZOBR_RS31130 0.10 +0.7
348,270 - AZOBR_RS31130 0.10 +0.7
348,434 + AZOBR_RS31130 0.33 -0.6
348,575 + AZOBR_RS31130 0.53 +1.7
348,575 + AZOBR_RS31130 0.53 +0.7
348,575 + AZOBR_RS31130 0.53 -0.4
348,602 + AZOBR_RS31130 0.57 +0.4
348,603 - AZOBR_RS31130 0.57 -0.8
348,603 - AZOBR_RS31130 0.57 +0.1
348,638 + AZOBR_RS31130 0.62 -0.3
348,639 - AZOBR_RS31130 0.62 +1.1
348,639 - AZOBR_RS31130 0.62 +0.0
348,671 + AZOBR_RS31130 0.67 -0.1
348,671 + AZOBR_RS31130 0.67 -1.6
348,672 - AZOBR_RS31130 0.67 -0.4
348,672 - AZOBR_RS31130 0.67 -0.3
348,987 - -0.4
348,987 - -0.3
348,987 - -1.1
349,017 - -0.8

Or see this region's nucleotide sequence