Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29810 and AZOBR_RS29815 are separated by 97 nucleotides AZOBR_RS29815 and AZOBR_RS29820 are separated by 339 nucleotides AZOBR_RS29820 and AZOBR_RS29825 overlap by 23 nucleotides
AZOBR_RS29810: AZOBR_RS29810 - phosphoribosylglycinamide formyltransferase, at 36,263 to 37,432
_RS29810
AZOBR_RS29815: AZOBR_RS29815 - conserved exported protein of unknown function, at 37,530 to 38,027
_RS29815
AZOBR_RS29820: AZOBR_RS29820 - ABC transporter substrate-binding protein, at 38,367 to 39,398
_RS29820
AZOBR_RS29825: AZOBR_RS29825 - iron ABC transporter permease, at 39,376 to 40,407
_RS29825
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 37.415 kb on + strand at 37.490 kb on + strand at 37.490 kb on + strand at 37.490 kb on + strand at 37.491 kb on - strand at 37.491 kb on - strand at 37.491 kb on - strand at 37.510 kb on + strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.532 kb on - strand at 37.849 kb on + strand, within AZOBR_RS29815 at 37.849 kb on + strand, within AZOBR_RS29815 at 37.849 kb on + strand, within AZOBR_RS29815 at 38.067 kb on - strand at 38.136 kb on + strand at 38.137 kb on - strand at 38.184 kb on + strand at 38.248 kb on - strand at 38.248 kb on - strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.520 kb on + strand, within AZOBR_RS29820 at 38.520 kb on + strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.931 kb on + strand, within AZOBR_RS29820 at 38.931 kb on + strand, within AZOBR_RS29820 at 38.931 kb on + strand, within AZOBR_RS29820 at 38.932 kb on - strand, within AZOBR_RS29820 at 38.932 kb on - strand, within AZOBR_RS29820 at 39.120 kb on + strand, within AZOBR_RS29820 at 39.121 kb on - strand, within AZOBR_RS29820 at 39.121 kb on - strand, within AZOBR_RS29820 at 39.183 kb on + strand, within AZOBR_RS29820 at 39.321 kb on + strand at 39.321 kb on + strand at 39.321 kb on + strand at 39.333 kb on + strand at 39.479 kb on - strand at 39.643 kb on + strand, within AZOBR_RS29825
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 37,415 + -1.4 37,490 + +0.2 37,490 + +0.6 37,490 + +2.3 37,491 - -0.3 37,491 - -2.0 37,491 - -1.5 37,510 + -2.5 37,511 - +0.3 37,511 - +2.0 37,511 - +0.1 37,511 - -0.2 37,532 - -0.1 37,849 + AZOBR_RS29815 0.64 -0.8 37,849 + AZOBR_RS29815 0.64 -1.4 37,849 + AZOBR_RS29815 0.64 +0.4 38,067 - -1.3 38,136 + -1.0 38,137 - +1.7 38,184 + +0.1 38,248 - -1.2 38,248 - +1.1 38,360 + +0.3 38,360 + +0.1 38,360 + +0.2 38,360 + +3.5 38,361 - -1.1 38,361 - -0.7 38,361 - +0.4 38,361 - +2.1 38,361 - -0.2 38,361 - -1.1 38,520 + AZOBR_RS29820 0.15 -0.1 38,520 + AZOBR_RS29820 0.15 -1.8 38,521 - AZOBR_RS29820 0.15 +0.7 38,521 - AZOBR_RS29820 0.15 -0.2 38,521 - AZOBR_RS29820 0.15 -0.3 38,521 - AZOBR_RS29820 0.15 +0.5 38,521 - AZOBR_RS29820 0.15 +0.4 38,931 + AZOBR_RS29820 0.55 -0.2 38,931 + AZOBR_RS29820 0.55 +1.3 38,931 + AZOBR_RS29820 0.55 -0.2 38,932 - AZOBR_RS29820 0.55 +0.1 38,932 - AZOBR_RS29820 0.55 +0.2 39,120 + AZOBR_RS29820 0.73 -1.8 39,121 - AZOBR_RS29820 0.73 -0.3 39,121 - AZOBR_RS29820 0.73 -0.8 39,183 + AZOBR_RS29820 0.79 -1.6 39,321 + -0.1 39,321 + +1.0 39,321 + +0.7 39,333 + +0.2 39,479 - +1.1 39,643 + AZOBR_RS29825 0.26 +1.0
Or see this region's nucleotide sequence