Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26660 and AZOBR_RS26665 are separated by 40 nucleotides AZOBR_RS26665 and AZOBR_RS26670 are separated by 192 nucleotides AZOBR_RS26670 and AZOBR_RS26675 are separated by 5 nucleotides AZOBR_RS26675 and AZOBR_RS26680 are separated by 85 nucleotides
AZOBR_RS26660: AZOBR_RS26660 - signal peptidase II, at 129,467 to 129,997
_RS26660
AZOBR_RS26665: AZOBR_RS26665 - conserved hypothetical protein; putative signal peptide; twin-arginine translocation signal domain protein, at 130,038 to 130,688
_RS26665
AZOBR_RS26670: AZOBR_RS26670 - zinc transporter ZitB, at 130,881 to 131,759
_RS26670
AZOBR_RS26675: AZOBR_RS26675 - IclR family transcriptional regulator, at 131,765 to 132,649
_RS26675
AZOBR_RS26680: AZOBR_RS26680 - ABC transporter permease, at 132,735 to 133,655
_RS26680
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.393 kb on - strand, within AZOBR_RS26665 at 130.507 kb on - strand, within AZOBR_RS26665 at 130.507 kb on - strand, within AZOBR_RS26665 at 130.641 kb on + strand at 130.642 kb on - strand at 130.642 kb on - strand at 130.642 kb on - strand at 130.642 kb on - strand at 130.832 kb on + strand at 130.832 kb on + strand at 130.833 kb on - strand at 130.844 kb on + strand at 130.844 kb on + strand at 130.844 kb on + strand at 131.094 kb on + strand, within AZOBR_RS26670 at 131.094 kb on + strand, within AZOBR_RS26670 at 131.127 kb on + strand, within AZOBR_RS26670 at 131.128 kb on - strand, within AZOBR_RS26670 at 131.609 kb on - strand, within AZOBR_RS26670 at 131.973 kb on + strand, within AZOBR_RS26675 at 131.973 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.309 kb on + strand, within AZOBR_RS26675 at 132.310 kb on - strand, within AZOBR_RS26675 at 132.310 kb on - strand, within AZOBR_RS26675 at 132.316 kb on - strand, within AZOBR_RS26675 at 132.316 kb on - strand, within AZOBR_RS26675 at 132.349 kb on - strand, within AZOBR_RS26675 at 132.378 kb on + strand, within AZOBR_RS26675 at 132.685 kb on + strand at 132.686 kb on - strand at 132.691 kb on + strand at 132.691 kb on + strand at 132.692 kb on - strand at 132.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 130,393 - AZOBR_RS26665 0.55 +1.1 130,507 - AZOBR_RS26665 0.72 -2.6 130,507 - AZOBR_RS26665 0.72 -0.5 130,641 + -0.7 130,642 - -0.3 130,642 - +0.1 130,642 - +2.4 130,642 - +1.7 130,832 + +2.7 130,832 + -0.4 130,833 - +1.5 130,844 + -0.3 130,844 + -1.5 130,844 + +1.0 131,094 + AZOBR_RS26670 0.24 +0.8 131,094 + AZOBR_RS26670 0.24 +1.1 131,127 + AZOBR_RS26670 0.28 +0.6 131,128 - AZOBR_RS26670 0.28 +0.3 131,609 - AZOBR_RS26670 0.83 -0.5 131,973 + AZOBR_RS26675 0.24 +1.4 131,973 + AZOBR_RS26675 0.24 +1.0 132,129 + AZOBR_RS26675 0.41 +1.9 132,129 + AZOBR_RS26675 0.41 -0.0 132,129 + AZOBR_RS26675 0.41 -0.8 132,309 + AZOBR_RS26675 0.61 +0.9 132,310 - AZOBR_RS26675 0.62 +0.7 132,310 - AZOBR_RS26675 0.62 +0.2 132,316 - AZOBR_RS26675 0.62 +1.2 132,316 - AZOBR_RS26675 0.62 +0.7 132,349 - AZOBR_RS26675 0.66 -0.1 132,378 + AZOBR_RS26675 0.69 +1.0 132,685 + +0.2 132,686 - -0.6 132,691 + -1.3 132,691 + -0.5 132,692 - -0.3 132,692 - -1.1
Or see this region's nucleotide sequence