Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25480 and AZOBR_RS25485 are separated by 6 nucleotides AZOBR_RS25485 and AZOBR_RS25490 are separated by 13 nucleotides AZOBR_RS25490 and AZOBR_RS25495 are separated by 21 nucleotides AZOBR_RS25495 and AZOBR_RS25500 are separated by 62 nucleotides AZOBR_RS25500 and AZOBR_RS25505 are separated by 100 nucleotides
AZOBR_RS25480: AZOBR_RS25480 - sugar ABC transporter ATPase, at 769,877 to 770,647
_RS25480
AZOBR_RS25485: AZOBR_RS25485 - amino acid ABC transporter ATPase, at 770,654 to 771,370
_RS25485
AZOBR_RS25490: AZOBR_RS25490 - putative Extracellular ligand-binding receptor, at 771,384 to 772,502
_RS25490
AZOBR_RS25495: AZOBR_RS25495 - hypothetical protein, at 772,524 to 772,847
_RS25495
AZOBR_RS25500: AZOBR_RS25500 - hypothetical protein, at 772,910 to 773,264
_RS25500
AZOBR_RS25505: AZOBR_RS25505 - hypothetical protein, at 773,365 to 773,919
_RS25505
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2 at 770.633 kb on + strand at 770.633 kb on + strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.999 kb on + strand, within AZOBR_RS25485 at 771.000 kb on - strand, within AZOBR_RS25485 at 771.260 kb on + strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.338 kb on + strand at 771.338 kb on + strand at 771.655 kb on - strand, within AZOBR_RS25490 at 771.900 kb on + strand, within AZOBR_RS25490 at 771.901 kb on - strand, within AZOBR_RS25490 at 771.901 kb on - strand, within AZOBR_RS25490 at 772.251 kb on + strand, within AZOBR_RS25490 at 772.300 kb on - strand, within AZOBR_RS25490 at 772.300 kb on - strand, within AZOBR_RS25490 at 772.351 kb on - strand, within AZOBR_RS25490 at 772.452 kb on + strand at 772.453 kb on - strand at 772.453 kb on - strand at 773.034 kb on + strand, within AZOBR_RS25500 at 773.034 kb on + strand, within AZOBR_RS25500 at 773.184 kb on - strand, within AZOBR_RS25500
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 770,633 + -0.1 770,633 + +0.6 770,685 - +0.4 770,685 - +0.9 770,685 - -0.6 770,685 - -1.6 770,999 + AZOBR_RS25485 0.48 -1.9 771,000 - AZOBR_RS25485 0.48 +0.3 771,260 + AZOBR_RS25485 0.85 +1.0 771,261 - AZOBR_RS25485 0.85 -1.2 771,261 - AZOBR_RS25485 0.85 -1.1 771,261 - AZOBR_RS25485 0.85 +0.1 771,261 - AZOBR_RS25485 0.85 -0.5 771,261 - AZOBR_RS25485 0.85 +1.4 771,261 - AZOBR_RS25485 0.85 -0.9 771,338 + -0.0 771,338 + -1.3 771,655 - AZOBR_RS25490 0.24 -0.9 771,900 + AZOBR_RS25490 0.46 -1.6 771,901 - AZOBR_RS25490 0.46 -0.3 771,901 - AZOBR_RS25490 0.46 -1.4 772,251 + AZOBR_RS25490 0.77 -0.0 772,300 - AZOBR_RS25490 0.82 +0.7 772,300 - AZOBR_RS25490 0.82 -0.4 772,351 - AZOBR_RS25490 0.86 -0.4 772,452 + +0.1 772,453 - +0.4 772,453 - -2.0 773,034 + AZOBR_RS25500 0.35 -1.3 773,034 + AZOBR_RS25500 0.35 +2.4 773,184 - AZOBR_RS25500 0.77 -1.1
Or see this region's nucleotide sequence