Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23915

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS23910 and AZOBR_RS23915 are separated by 439 nucleotidesAZOBR_RS23915 and AZOBR_RS23920 are separated by 2 nucleotidesAZOBR_RS23920 and AZOBR_RS23925 are separated by 4 nucleotides AZOBR_RS23910: AZOBR_RS23910 - N-carbamoylsarcosine amidase, at 395,101 to 395,730 _RS23910 AZOBR_RS23915: AZOBR_RS23915 - ABC transporter substrate-binding protein, at 396,170 to 397,660 _RS23915 AZOBR_RS23920: AZOBR_RS23920 - peptide ABC transporter permease, at 397,663 to 398,601 _RS23920 AZOBR_RS23925: AZOBR_RS23925 - peptide ABC transporter permease, at 398,606 to 399,493 _RS23925 Position (kb) 396 397 398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 395.711 kb on + strandat 395.711 kb on + strandat 395.711 kb on + strandat 395.711 kb on + strandat 395.711 kb on + strandat 395.711 kb on + strandat 395.711 kb on + strandat 395.711 kb on + strandat 395.712 kb on - strandat 395.712 kb on - strandat 395.785 kb on + strandat 395.786 kb on - strandat 396.077 kb on - strandat 396.077 kb on - strandat 396.326 kb on + strand, within AZOBR_RS23915at 396.327 kb on - strand, within AZOBR_RS23915at 396.399 kb on - strand, within AZOBR_RS23915at 396.513 kb on - strand, within AZOBR_RS23915at 396.513 kb on - strand, within AZOBR_RS23915at 396.607 kb on + strand, within AZOBR_RS23915at 396.764 kb on + strand, within AZOBR_RS23915at 396.765 kb on - strand, within AZOBR_RS23915at 396.765 kb on - strand, within AZOBR_RS23915at 396.765 kb on - strand, within AZOBR_RS23915at 397.133 kb on + strand, within AZOBR_RS23915at 397.436 kb on + strand, within AZOBR_RS23915at 397.436 kb on + strand, within AZOBR_RS23915at 397.505 kb on + strand, within AZOBR_RS23915at 397.506 kb on - strand, within AZOBR_RS23915at 397.506 kb on - strand, within AZOBR_RS23915at 397.506 kb on - strand, within AZOBR_RS23915at 397.506 kb on - strand, within AZOBR_RS23915at 397.506 kb on - strand, within AZOBR_RS23915at 397.768 kb on + strand, within AZOBR_RS23920at 397.768 kb on + strand, within AZOBR_RS23920at 397.768 kb on + strand, within AZOBR_RS23920at 397.769 kb on - strand, within AZOBR_RS23920at 397.769 kb on - strand, within AZOBR_RS23920at 397.843 kb on + strand, within AZOBR_RS23920at 397.843 kb on + strand, within AZOBR_RS23920at 397.843 kb on + strand, within AZOBR_RS23920at 397.861 kb on + strand, within AZOBR_RS23920at 397.861 kb on + strand, within AZOBR_RS23920at 397.862 kb on - strand, within AZOBR_RS23920at 397.862 kb on - strand, within AZOBR_RS23920at 397.862 kb on - strand, within AZOBR_RS23920at 397.862 kb on - strand, within AZOBR_RS23920at 397.862 kb on - strand, within AZOBR_RS23920at 398.239 kb on + strand, within AZOBR_RS23920at 398.239 kb on + strand, within AZOBR_RS23920at 398.239 kb on + strand, within AZOBR_RS23920at 398.240 kb on - strand, within AZOBR_RS23920at 398.240 kb on - strand, within AZOBR_RS23920at 398.240 kb on - strand, within AZOBR_RS23920at 398.491 kb on + strand, within AZOBR_RS23920at 398.491 kb on + strand, within AZOBR_RS23920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
395,711 + +0.8
395,711 + +0.4
395,711 + -0.4
395,711 + -3.8
395,711 + -1.3
395,711 + -2.1
395,711 + -1.0
395,711 + -0.7
395,712 - -0.0
395,712 - +0.4
395,785 + +0.3
395,786 - +0.9
396,077 - -1.1
396,077 - -0.6
396,326 + AZOBR_RS23915 0.10 -0.2
396,327 - AZOBR_RS23915 0.11 -0.6
396,399 - AZOBR_RS23915 0.15 -2.0
396,513 - AZOBR_RS23915 0.23 -0.3
396,513 - AZOBR_RS23915 0.23 -1.5
396,607 + AZOBR_RS23915 0.29 +0.6
396,764 + AZOBR_RS23915 0.40 -0.3
396,765 - AZOBR_RS23915 0.40 -1.8
396,765 - AZOBR_RS23915 0.40 -1.3
396,765 - AZOBR_RS23915 0.40 -1.0
397,133 + AZOBR_RS23915 0.65 -2.6
397,436 + AZOBR_RS23915 0.85 -0.1
397,436 + AZOBR_RS23915 0.85 +1.0
397,505 + AZOBR_RS23915 0.90 +0.3
397,506 - AZOBR_RS23915 0.90 -0.0
397,506 - AZOBR_RS23915 0.90 -0.7
397,506 - AZOBR_RS23915 0.90 -1.2
397,506 - AZOBR_RS23915 0.90 -1.2
397,506 - AZOBR_RS23915 0.90 -0.7
397,768 + AZOBR_RS23920 0.11 +2.6
397,768 + AZOBR_RS23920 0.11 +0.2
397,768 + AZOBR_RS23920 0.11 +1.2
397,769 - AZOBR_RS23920 0.11 -2.6
397,769 - AZOBR_RS23920 0.11 +0.0
397,843 + AZOBR_RS23920 0.19 -2.4
397,843 + AZOBR_RS23920 0.19 +0.7
397,843 + AZOBR_RS23920 0.19 -0.6
397,861 + AZOBR_RS23920 0.21 -0.7
397,861 + AZOBR_RS23920 0.21 +1.0
397,862 - AZOBR_RS23920 0.21 +1.5
397,862 - AZOBR_RS23920 0.21 +0.6
397,862 - AZOBR_RS23920 0.21 -0.6
397,862 - AZOBR_RS23920 0.21 -0.5
397,862 - AZOBR_RS23920 0.21 -0.2
398,239 + AZOBR_RS23920 0.61 +0.0
398,239 + AZOBR_RS23920 0.61 -0.6
398,239 + AZOBR_RS23920 0.61 +0.2
398,240 - AZOBR_RS23920 0.61 +0.1
398,240 - AZOBR_RS23920 0.61 +0.3
398,240 - AZOBR_RS23920 0.61 -1.1
398,491 + AZOBR_RS23920 0.88 +0.4
398,491 + AZOBR_RS23920 0.88 -0.7

Or see this region's nucleotide sequence