Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23040

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23030 and AZOBR_RS23035 are separated by 10 nucleotidesAZOBR_RS23035 and AZOBR_RS23040 are separated by 27 nucleotidesAZOBR_RS23040 and AZOBR_RS23045 are separated by 147 nucleotides AZOBR_RS23030: AZOBR_RS23030 - ABC transporter ATP-binding protein, at 180,898 to 182,562 _RS23030 AZOBR_RS23035: AZOBR_RS23035 - 2-dehydropantoate 2-reductase, at 182,573 to 183,523 _RS23035 AZOBR_RS23040: AZOBR_RS23040 - allantoate amidohydrolase, at 183,551 to 184,780 _RS23040 AZOBR_RS23045: AZOBR_RS23045 - acetylpolyamine aminohydrolase, at 184,928 to 185,989 _RS23045 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 183.543 kb on + strandat 183.839 kb on + strand, within AZOBR_RS23040at 183.839 kb on + strand, within AZOBR_RS23040at 183.839 kb on + strand, within AZOBR_RS23040at 183.840 kb on - strand, within AZOBR_RS23040at 184.106 kb on + strand, within AZOBR_RS23040at 184.197 kb on - strand, within AZOBR_RS23040at 184.635 kb on - strand, within AZOBR_RS23040at 184.779 kb on - strandat 185.435 kb on + strand, within AZOBR_RS23045at 185.561 kb on + strand, within AZOBR_RS23045at 185.615 kb on + strand, within AZOBR_RS23045

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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183,543 + -0.8
183,839 + AZOBR_RS23040 0.23 -2.5
183,839 + AZOBR_RS23040 0.23 +1.9
183,839 + AZOBR_RS23040 0.23 +0.6
183,840 - AZOBR_RS23040 0.23 -1.1
184,106 + AZOBR_RS23040 0.45 -0.0
184,197 - AZOBR_RS23040 0.53 +0.1
184,635 - AZOBR_RS23040 0.88 -0.2
184,779 - +1.7
185,435 + AZOBR_RS23045 0.48 +0.9
185,561 + AZOBR_RS23045 0.60 +0.1
185,615 + AZOBR_RS23045 0.65 -0.1

Or see this region's nucleotide sequence