Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22490 and AZOBR_RS22495 are separated by 35 nucleotides AZOBR_RS22495 and AZOBR_RS22500 are separated by 293 nucleotides
AZOBR_RS22490: AZOBR_RS22490 - conserved hypothetical protein with CBS domain, at 57,024 to 57,710
_RS22490
AZOBR_RS22495: AZOBR_RS22495 - GntR family transcriptional regulator, at 57,746 to 58,432
_RS22495
AZOBR_RS22500: AZOBR_RS22500 - methylmalonate-semialdehyde dehydrogenase, at 58,726 to 60,225
_RS22500
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 56.939 kb on + strand at 57.810 kb on - strand at 57.810 kb on - strand at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.961 kb on - strand, within AZOBR_RS22495 at 57.986 kb on + strand, within AZOBR_RS22495 at 57.987 kb on - strand, within AZOBR_RS22495 at 58.151 kb on - strand, within AZOBR_RS22495 at 58.161 kb on - strand, within AZOBR_RS22495 at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.503 kb on - strand at 58.503 kb on - strand at 58.527 kb on + strand at 58.528 kb on - strand at 58.687 kb on - strand at 58.687 kb on - strand at 58.811 kb on + strand at 58.812 kb on - strand at 58.887 kb on - strand, within AZOBR_RS22500 at 59.001 kb on - strand, within AZOBR_RS22500 at 59.088 kb on - strand, within AZOBR_RS22500
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 56,939 + +0.8 57,810 - +0.6 57,810 - +0.9 57,848 + AZOBR_RS22495 0.15 -0.3 57,848 + AZOBR_RS22495 0.15 -0.4 57,848 + AZOBR_RS22495 0.15 -0.8 57,848 + AZOBR_RS22495 0.15 +0.9 57,848 + AZOBR_RS22495 0.15 +0.2 57,848 + AZOBR_RS22495 0.15 -0.6 57,848 + AZOBR_RS22495 0.15 +0.1 57,848 + AZOBR_RS22495 0.15 +1.0 57,848 + AZOBR_RS22495 0.15 +0.3 57,849 - AZOBR_RS22495 0.15 -0.6 57,849 - AZOBR_RS22495 0.15 +0.3 57,849 - AZOBR_RS22495 0.15 +0.2 57,849 - AZOBR_RS22495 0.15 +1.0 57,849 - AZOBR_RS22495 0.15 -2.4 57,849 - AZOBR_RS22495 0.15 +1.2 57,961 - AZOBR_RS22495 0.31 +0.3 57,986 + AZOBR_RS22495 0.35 +1.5 57,987 - AZOBR_RS22495 0.35 -1.0 58,151 - AZOBR_RS22495 0.59 +0.4 58,161 - AZOBR_RS22495 0.60 +0.6 58,502 + -1.8 58,502 + -3.5 58,502 + -3.3 58,502 + -0.5 58,502 + +1.3 58,502 + +0.6 58,503 - -1.6 58,503 - -0.8 58,527 + -0.5 58,528 - +1.6 58,687 - +1.2 58,687 - -0.6 58,811 + +0.6 58,812 - -0.6 58,887 - AZOBR_RS22500 0.11 -0.5 59,001 - AZOBR_RS22500 0.18 -0.8 59,088 - AZOBR_RS22500 0.24 -2.3
Or see this region's nucleotide sequence