Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19160

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19150 and AZOBR_RS19155 overlap by 4 nucleotidesAZOBR_RS19155 and AZOBR_RS19160 overlap by 4 nucleotidesAZOBR_RS19160 and AZOBR_RS14380 are separated by 166 nucleotidesAZOBR_RS14380 and AZOBR_RS19165 are separated by 54 nucleotides AZOBR_RS19150: AZOBR_RS19150 - ABC transporter permease, at 1,064,856 to 1,065,875 _RS19150 AZOBR_RS19155: AZOBR_RS19155 - periplasmic binding protein, at 1,065,872 to 1,066,732 _RS19155 AZOBR_RS19160: AZOBR_RS19160 - outer membrane cobalamin receptor protein BtuB, at 1,066,729 to 1,068,606 _RS19160 AZOBR_RS14380: AZOBR_RS14380 - cobalamin, at 1,068,773 to 1,068,992 _RS14380 AZOBR_RS19165: AZOBR_RS19165 - hypothetical protein, at 1,069,047 to 1,069,505 _RS19165 Position (kb) 1066 1067 1068 1069Strain fitness (log2 ratio) -2 -1 0 1 2at 1065.769 kb on + strand, within AZOBR_RS19150at 1065.769 kb on + strand, within AZOBR_RS19150at 1066.614 kb on - strand, within AZOBR_RS19155at 1066.778 kb on + strandat 1066.856 kb on + strandat 1066.925 kb on + strand, within AZOBR_RS19160at 1066.926 kb on - strand, within AZOBR_RS19160at 1066.953 kb on - strand, within AZOBR_RS19160at 1066.953 kb on - strand, within AZOBR_RS19160at 1067.327 kb on + strand, within AZOBR_RS19160at 1067.333 kb on + strand, within AZOBR_RS19160at 1067.333 kb on + strand, within AZOBR_RS19160at 1067.334 kb on - strand, within AZOBR_RS19160at 1067.334 kb on - strand, within AZOBR_RS19160at 1067.373 kb on - strand, within AZOBR_RS19160at 1067.373 kb on - strand, within AZOBR_RS19160at 1067.411 kb on + strand, within AZOBR_RS19160at 1067.412 kb on - strand, within AZOBR_RS19160at 1067.513 kb on + strand, within AZOBR_RS19160at 1067.513 kb on + strand, within AZOBR_RS19160at 1067.514 kb on - strand, within AZOBR_RS19160at 1067.514 kb on - strand, within AZOBR_RS19160at 1067.657 kb on + strand, within AZOBR_RS19160at 1067.807 kb on + strand, within AZOBR_RS19160at 1067.808 kb on - strand, within AZOBR_RS19160at 1068.194 kb on + strand, within AZOBR_RS19160at 1068.266 kb on + strand, within AZOBR_RS19160at 1068.370 kb on - strand, within AZOBR_RS19160at 1068.906 kb on - strand, within AZOBR_RS14380at 1068.906 kb on - strand, within AZOBR_RS14380at 1068.989 kb on + strandat 1068.990 kb on - strandat 1069.123 kb on + strand, within AZOBR_RS19165at 1069.123 kb on + strand, within AZOBR_RS19165at 1069.124 kb on - strand, within AZOBR_RS19165at 1069.171 kb on + strand, within AZOBR_RS19165at 1069.198 kb on + strand, within AZOBR_RS19165at 1069.199 kb on - strand, within AZOBR_RS19165at 1069.277 kb on - strand, within AZOBR_RS19165at 1069.420 kb on + strand, within AZOBR_RS19165at 1069.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,065,769 + AZOBR_RS19150 0.90 -0.2
1,065,769 + AZOBR_RS19150 0.90 -1.0
1,066,614 - AZOBR_RS19155 0.86 +2.5
1,066,778 + +0.5
1,066,856 + -1.1
1,066,925 + AZOBR_RS19160 0.10 +2.5
1,066,926 - AZOBR_RS19160 0.10 +0.3
1,066,953 - AZOBR_RS19160 0.12 +0.7
1,066,953 - AZOBR_RS19160 0.12 -2.4
1,067,327 + AZOBR_RS19160 0.32 +1.8
1,067,333 + AZOBR_RS19160 0.32 +1.3
1,067,333 + AZOBR_RS19160 0.32 -0.2
1,067,334 - AZOBR_RS19160 0.32 -0.7
1,067,334 - AZOBR_RS19160 0.32 -1.7
1,067,373 - AZOBR_RS19160 0.34 +0.8
1,067,373 - AZOBR_RS19160 0.34 -1.2
1,067,411 + AZOBR_RS19160 0.36 +1.0
1,067,412 - AZOBR_RS19160 0.36 +2.3
1,067,513 + AZOBR_RS19160 0.42 -1.1
1,067,513 + AZOBR_RS19160 0.42 -0.2
1,067,514 - AZOBR_RS19160 0.42 -1.2
1,067,514 - AZOBR_RS19160 0.42 +0.3
1,067,657 + AZOBR_RS19160 0.49 -0.7
1,067,807 + AZOBR_RS19160 0.57 +1.5
1,067,808 - AZOBR_RS19160 0.57 -1.8
1,068,194 + AZOBR_RS19160 0.78 -0.1
1,068,266 + AZOBR_RS19160 0.82 +1.1
1,068,370 - AZOBR_RS19160 0.87 +1.6
1,068,906 - AZOBR_RS14380 0.60 -1.5
1,068,906 - AZOBR_RS14380 0.60 +0.0
1,068,989 + -1.3
1,068,990 - +1.5
1,069,123 + AZOBR_RS19165 0.17 +0.3
1,069,123 + AZOBR_RS19165 0.17 -1.0
1,069,124 - AZOBR_RS19165 0.17 +0.8
1,069,171 + AZOBR_RS19165 0.27 +0.7
1,069,198 + AZOBR_RS19165 0.33 +1.2
1,069,199 - AZOBR_RS19165 0.33 -0.3
1,069,277 - AZOBR_RS19165 0.50 -1.0
1,069,420 + AZOBR_RS19165 0.81 -0.8
1,069,528 - +0.7

Or see this region's nucleotide sequence