Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18855

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18850 and AZOBR_RS18855 are separated by 209 nucleotidesAZOBR_RS18855 and AZOBR_RS18860 overlap by 4 nucleotides AZOBR_RS18850: AZOBR_RS18850 - arabinose 5-phosphate isomerase, at 1,000,400 to 1,001,428 _RS18850 AZOBR_RS18855: AZOBR_RS18855 - hypothetical protein, at 1,001,638 to 1,002,192 _RS18855 AZOBR_RS18860: AZOBR_RS18860 - hypothetical protein, at 1,002,189 to 1,003,088 _RS18860 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -3 -2 -1 0 1at 1001.092 kb on + strand, within AZOBR_RS18850at 1001.092 kb on + strand, within AZOBR_RS18850at 1001.092 kb on + strand, within AZOBR_RS18850

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,001,092 + AZOBR_RS18850 0.67 -0.9
1,001,092 + AZOBR_RS18850 0.67 -3.0
1,001,092 + AZOBR_RS18850 0.67 -1.3

Or see this region's nucleotide sequence