Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17775 and AZOBR_RS17780 are separated by 282 nucleotides AZOBR_RS17780 and AZOBR_RS17785 are separated by 173 nucleotides AZOBR_RS17785 and AZOBR_RS17790 are separated by 267 nucleotides AZOBR_RS17790 and AZOBR_RS17795 are separated by 66 nucleotides
AZOBR_RS17775: AZOBR_RS17775 - molecular chaperone DnaJ, at 749,961 to 750,908
_RS17775
AZOBR_RS17780: AZOBR_RS17780 - hypothetical protein, at 751,191 to 751,571
_RS17780
AZOBR_RS17785: AZOBR_RS17785 - hypothetical protein, at 751,745 to 752,050
_RS17785
AZOBR_RS17790: AZOBR_RS17790 - thioredoxin peroxidase, at 752,318 to 752,785
_RS17790
AZOBR_RS17795: AZOBR_RS17795 - hypothetical protein, at 752,852 to 753,373
_RS17795
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.755 kb on - strand, within AZOBR_RS17775 at 750.895 kb on + strand at 750.896 kb on - strand at 750.896 kb on - strand at 751.004 kb on + strand at 751.005 kb on - strand at 751.185 kb on + strand at 751.185 kb on + strand at 751.185 kb on + strand at 751.185 kb on + strand at 751.185 kb on + strand at 751.186 kb on - strand at 751.239 kb on + strand, within AZOBR_RS17780 at 751.239 kb on + strand, within AZOBR_RS17780 at 751.240 kb on - strand, within AZOBR_RS17780 at 751.243 kb on + strand, within AZOBR_RS17780 at 751.344 kb on + strand, within AZOBR_RS17780 at 751.699 kb on + strand at 751.699 kb on + strand at 751.745 kb on + strand at 751.746 kb on - strand at 751.747 kb on + strand at 751.799 kb on + strand, within AZOBR_RS17785 at 751.799 kb on + strand, within AZOBR_RS17785 at 751.800 kb on - strand, within AZOBR_RS17785 at 751.800 kb on - strand, within AZOBR_RS17785 at 751.800 kb on - strand, within AZOBR_RS17785 at 751.800 kb on - strand, within AZOBR_RS17785 at 752.159 kb on + strand at 752.159 kb on + strand at 752.256 kb on + strand at 752.432 kb on + strand, within AZOBR_RS17790 at 752.432 kb on + strand, within AZOBR_RS17790 at 752.433 kb on - strand, within AZOBR_RS17790 at 752.477 kb on + strand, within AZOBR_RS17790 at 752.477 kb on + strand, within AZOBR_RS17790 at 752.478 kb on - strand, within AZOBR_RS17790 at 752.634 kb on - strand, within AZOBR_RS17790 at 752.784 kb on - strand at 752.784 kb on - strand at 752.809 kb on - strand at 752.939 kb on + strand, within AZOBR_RS17795 at 752.940 kb on - strand, within AZOBR_RS17795 at 752.940 kb on - strand, within AZOBR_RS17795 at 752.952 kb on - strand, within AZOBR_RS17795 at 752.952 kb on - strand, within AZOBR_RS17795 at 752.996 kb on + strand, within AZOBR_RS17795
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 750,755 - AZOBR_RS17775 0.84 -0.1 750,895 + -1.7 750,896 - -0.5 750,896 - +0.1 751,004 + +2.0 751,005 - +0.6 751,185 + +0.4 751,185 + +0.2 751,185 + -2.3 751,185 + -0.8 751,185 + -1.8 751,186 - +0.6 751,239 + AZOBR_RS17780 0.13 -0.4 751,239 + AZOBR_RS17780 0.13 +0.1 751,240 - AZOBR_RS17780 0.13 -0.6 751,243 + AZOBR_RS17780 0.14 +0.3 751,344 + AZOBR_RS17780 0.40 -0.1 751,699 + +0.4 751,699 + +2.6 751,745 + +2.6 751,746 - +1.4 751,747 + -2.7 751,799 + AZOBR_RS17785 0.18 -0.0 751,799 + AZOBR_RS17785 0.18 -0.7 751,800 - AZOBR_RS17785 0.18 +0.9 751,800 - AZOBR_RS17785 0.18 -1.0 751,800 - AZOBR_RS17785 0.18 -0.8 751,800 - AZOBR_RS17785 0.18 -3.3 752,159 + +0.9 752,159 + +1.6 752,256 + -0.2 752,432 + AZOBR_RS17790 0.24 -1.2 752,432 + AZOBR_RS17790 0.24 -2.5 752,433 - AZOBR_RS17790 0.25 +0.9 752,477 + AZOBR_RS17790 0.34 -0.3 752,477 + AZOBR_RS17790 0.34 -1.2 752,478 - AZOBR_RS17790 0.34 +0.8 752,634 - AZOBR_RS17790 0.68 +1.6 752,784 - -1.4 752,784 - -0.0 752,809 - +0.5 752,939 + AZOBR_RS17795 0.17 +1.0 752,940 - AZOBR_RS17795 0.17 -0.3 752,940 - AZOBR_RS17795 0.17 +0.5 752,952 - AZOBR_RS17795 0.19 -0.8 752,952 - AZOBR_RS17795 0.19 -2.0 752,996 + AZOBR_RS17795 0.28 -0.2
Or see this region's nucleotide sequence