Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16730

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16725 and AZOBR_RS16730 are separated by 67 nucleotidesAZOBR_RS16730 and AZOBR_RS16735 are separated by 31 nucleotides AZOBR_RS16725: AZOBR_RS16725 - cobalt-precorrin-6A synthase, at 509,517 to 510,626 _RS16725 AZOBR_RS16730: AZOBR_RS16730 - uroporphyrin-III methyltransferase, at 510,694 to 511,437 _RS16730 AZOBR_RS16735: AZOBR_RS16735 - cobyrinic acid a c-diamide synthase, at 511,469 to 512,800 _RS16735 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1at 509.882 kb on - strand, within AZOBR_RS16725at 509.941 kb on + strand, within AZOBR_RS16725at 510.788 kb on + strand, within AZOBR_RS16730at 510.789 kb on - strand, within AZOBR_RS16730at 510.789 kb on - strand, within AZOBR_RS16730at 511.088 kb on - strand, within AZOBR_RS16730at 511.088 kb on - strand, within AZOBR_RS16730at 511.210 kb on + strand, within AZOBR_RS16730at 511.210 kb on + strand, within AZOBR_RS16730at 511.210 kb on + strand, within AZOBR_RS16730at 511.607 kb on + strand, within AZOBR_RS16735at 511.608 kb on - strand, within AZOBR_RS16735at 511.608 kb on - strand, within AZOBR_RS16735at 511.901 kb on + strand, within AZOBR_RS16735at 511.901 kb on + strand, within AZOBR_RS16735at 512.357 kb on + strand, within AZOBR_RS16735at 512.358 kb on - strand, within AZOBR_RS16735at 512.358 kb on - strand, within AZOBR_RS16735at 512.358 kb on - strand, within AZOBR_RS16735

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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509,882 - AZOBR_RS16725 0.33 -0.3
509,941 + AZOBR_RS16725 0.38 -0.9
510,788 + AZOBR_RS16730 0.13 +1.4
510,789 - AZOBR_RS16730 0.13 -1.8
510,789 - AZOBR_RS16730 0.13 -0.8
511,088 - AZOBR_RS16730 0.53 -0.8
511,088 - AZOBR_RS16730 0.53 -0.7
511,210 + AZOBR_RS16730 0.69 -1.7
511,210 + AZOBR_RS16730 0.69 -2.2
511,210 + AZOBR_RS16730 0.69 +0.8
511,607 + AZOBR_RS16735 0.10 +0.9
511,608 - AZOBR_RS16735 0.10 -1.3
511,608 - AZOBR_RS16735 0.10 -1.0
511,901 + AZOBR_RS16735 0.32 -0.3
511,901 + AZOBR_RS16735 0.32 +1.6
512,357 + AZOBR_RS16735 0.67 -0.1
512,358 - AZOBR_RS16735 0.67 +0.3
512,358 - AZOBR_RS16735 0.67 -1.7
512,358 - AZOBR_RS16735 0.67 -1.4

Or see this region's nucleotide sequence