Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16305

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16295 and AZOBR_RS16300 are separated by 291 nucleotidesAZOBR_RS16300 and AZOBR_RS16305 are separated by 172 nucleotides AZOBR_RS16295: AZOBR_RS16295 - phosphoribosylglycinamide formyltransferase, at 405,532 to 406,200 _RS16295 AZOBR_RS16300: AZOBR_RS16300 - hypothetical protein, at 406,492 to 406,971 _RS16300 AZOBR_RS16305: AZOBR_RS16305 - nucleoside diphosphate kinase, at 407,144 to 407,566 _RS16305 Position (kb) 407 408Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 406.494 kb on - strandat 406.853 kb on + strand, within AZOBR_RS16300at 406.986 kb on + strandat 406.987 kb on - strandat 406.992 kb on + strandat 407.638 kb on - strandat 407.638 kb on - strandat 407.640 kb on - strandat 407.642 kb on - strandat 407.642 kb on - strandat 407.768 kb on - strandat 408.343 kb on + strandat 408.344 kb on - strandat 408.355 kb on + strandat 408.451 kb on + strandat 408.451 kb on + strandat 408.451 kb on + strandat 408.463 kb on + strandat 408.464 kb on - strandat 408.464 kb on - strandat 408.464 kb on - strandat 408.464 kb on - strandat 408.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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406,494 - +0.8
406,853 + AZOBR_RS16300 0.75 +0.7
406,986 + +0.2
406,987 - +0.5
406,992 + -0.3
407,638 - -2.0
407,638 - +0.2
407,640 - +1.3
407,642 - -1.0
407,642 - +0.6
407,768 - -1.4
408,343 + +1.5
408,344 - +0.6
408,355 + -0.3
408,451 + -2.6
408,451 + -0.7
408,451 + +4.6
408,463 + -1.1
408,464 - +0.7
408,464 - +0.5
408,464 - -0.3
408,464 - +0.9
408,464 - -2.0

Or see this region's nucleotide sequence