Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15720

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15715 and AZOBR_RS15720 are separated by 235 nucleotidesAZOBR_RS15720 and AZOBR_RS15725 are separated by 157 nucleotides AZOBR_RS15715: AZOBR_RS15715 - gluconokinase, at 278,384 to 278,869 _RS15715 AZOBR_RS15720: AZOBR_RS15720 - LacI family transcription regulator, at 279,105 to 280,112 _RS15720 AZOBR_RS15725: AZOBR_RS15725 - 6-phosphogluconate dehydrogenase, at 280,270 to 281,652 _RS15725 Position (kb) 279 280 281Strain fitness (log2 ratio) -1 0 1 2at 278.935 kb on + strandat 278.936 kb on - strandat 280.193 kb on + strandat 280.193 kb on + strandat 280.820 kb on - strand, within AZOBR_RS15725at 280.820 kb on - strand, within AZOBR_RS15725at 280.849 kb on + strand, within AZOBR_RS15725at 280.850 kb on - strand, within AZOBR_RS15725at 280.936 kb on + strand, within AZOBR_RS15725

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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278,935 + -0.2
278,936 - +0.9
280,193 + +2.1
280,193 + -1.2
280,820 - AZOBR_RS15725 0.40 -1.0
280,820 - AZOBR_RS15725 0.40 +0.0
280,849 + AZOBR_RS15725 0.42 +0.7
280,850 - AZOBR_RS15725 0.42 +0.7
280,936 + AZOBR_RS15725 0.48 -0.6

Or see this region's nucleotide sequence