Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08055 and AZOBR_RS08060 are separated by 100 nucleotides AZOBR_RS08060 and AZOBR_RS08065 are separated by 11 nucleotides AZOBR_RS08065 and AZOBR_RS08070 are separated by 26 nucleotides AZOBR_RS08070 and AZOBR_RS08075 are separated by 18 nucleotides AZOBR_RS08075 and AZOBR_RS08080 overlap by 4 nucleotides
AZOBR_RS08055: AZOBR_RS08055 - urease accessory protein, at 1,700,372 to 1,701,199
_RS08055
AZOBR_RS08060: AZOBR_RS08060 - urease subunit gamma, at 1,701,300 to 1,701,602
_RS08060
AZOBR_RS08065: AZOBR_RS08065 - urease subunit beta, at 1,701,614 to 1,701,919
_RS08065
AZOBR_RS08070: AZOBR_RS08070 - urease subunit alpha, at 1,701,946 to 1,703,655
_RS08070
AZOBR_RS08075: AZOBR_RS08075 - glutamate racemase, at 1,703,674 to 1,704,525
_RS08075
AZOBR_RS08080: AZOBR_RS08080 - urease accessory protein UreE, at 1,704,522 to 1,705,103
_RS08080
Position (kb) 1701
1702
1703
1704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1701.122 kb on + strand at 1701.260 kb on + strand at 1701.261 kb on - strand at 1701.424 kb on - strand, within AZOBR_RS08060 at 1701.424 kb on - strand, within AZOBR_RS08060 at 1701.732 kb on - strand, within AZOBR_RS08065 at 1701.732 kb on - strand, within AZOBR_RS08065 at 1701.864 kb on - strand, within AZOBR_RS08065 at 1701.864 kb on - strand, within AZOBR_RS08065 at 1701.986 kb on - strand at 1703.159 kb on - strand, within AZOBR_RS08070 at 1703.159 kb on - strand, within AZOBR_RS08070 at 1703.170 kb on + strand, within AZOBR_RS08070 at 1703.170 kb on + strand, within AZOBR_RS08070 at 1703.369 kb on - strand, within AZOBR_RS08070 at 1703.390 kb on - strand, within AZOBR_RS08070 at 1703.573 kb on - strand at 1703.641 kb on + strand at 1703.641 kb on + strand at 1703.642 kb on - strand at 1703.759 kb on - strand at 1703.785 kb on + strand, within AZOBR_RS08075 at 1703.786 kb on - strand, within AZOBR_RS08075 at 1703.786 kb on - strand, within AZOBR_RS08075 at 1703.812 kb on + strand, within AZOBR_RS08075 at 1703.812 kb on + strand, within AZOBR_RS08075 at 1703.812 kb on + strand, within AZOBR_RS08075 at 1703.812 kb on + strand, within AZOBR_RS08075 at 1703.812 kb on + strand, within AZOBR_RS08075 at 1703.813 kb on - strand, within AZOBR_RS08075 at 1704.214 kb on + strand, within AZOBR_RS08075 at 1704.215 kb on - strand, within AZOBR_RS08075 at 1704.376 kb on + strand, within AZOBR_RS08075 at 1704.377 kb on - strand, within AZOBR_RS08075
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,700,975 + AZOBR_RS08055 0.73 -0.7 1,700,975 + AZOBR_RS08055 0.73 +0.6 1,700,975 + AZOBR_RS08055 0.73 +0.2 1,700,975 + AZOBR_RS08055 0.73 -3.5 1,701,122 + +0.1 1,701,260 + -1.1 1,701,261 - -0.2 1,701,424 - AZOBR_RS08060 0.41 -2.4 1,701,424 - AZOBR_RS08060 0.41 +0.5 1,701,732 - AZOBR_RS08065 0.39 +0.5 1,701,732 - AZOBR_RS08065 0.39 +0.1 1,701,864 - AZOBR_RS08065 0.82 -1.6 1,701,864 - AZOBR_RS08065 0.82 -1.4 1,701,986 - -0.3 1,703,159 - AZOBR_RS08070 0.71 -0.3 1,703,159 - AZOBR_RS08070 0.71 -1.1 1,703,170 + AZOBR_RS08070 0.72 +0.3 1,703,170 + AZOBR_RS08070 0.72 -0.2 1,703,369 - AZOBR_RS08070 0.83 -0.1 1,703,390 - AZOBR_RS08070 0.84 +0.3 1,703,573 - -0.9 1,703,641 + -0.1 1,703,641 + +0.1 1,703,642 - -0.2 1,703,759 - -0.1 1,703,785 + AZOBR_RS08075 0.13 +1.1 1,703,786 - AZOBR_RS08075 0.13 +0.8 1,703,786 - AZOBR_RS08075 0.13 +0.2 1,703,812 + AZOBR_RS08075 0.16 -2.0 1,703,812 + AZOBR_RS08075 0.16 +0.9 1,703,812 + AZOBR_RS08075 0.16 +0.2 1,703,812 + AZOBR_RS08075 0.16 +0.2 1,703,812 + AZOBR_RS08075 0.16 -0.5 1,703,813 - AZOBR_RS08075 0.16 +0.7 1,704,214 + AZOBR_RS08075 0.63 -0.5 1,704,215 - AZOBR_RS08075 0.63 +0.8 1,704,376 + AZOBR_RS08075 0.82 +1.9 1,704,377 - AZOBR_RS08075 0.83 -1.8
Or see this region's nucleotide sequence