Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04665

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04660 and AZOBR_RS04665 are separated by 305 nucleotidesAZOBR_RS04665 and AZOBR_RS04670 are separated by 373 nucleotides AZOBR_RS04660: AZOBR_RS04660 - hypothetical protein, at 981,235 to 982,083 _RS04660 AZOBR_RS04665: AZOBR_RS04665 - hypothetical protein, at 982,389 to 983,135 _RS04665 AZOBR_RS04670: AZOBR_RS04670 - hypothetical protein, at 983,509 to 983,955 _RS04670 Position (kb) 982 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.556 kb on + strand, within AZOBR_RS04660at 981.556 kb on + strand, within AZOBR_RS04660at 981.556 kb on + strand, within AZOBR_RS04660at 981.844 kb on + strand, within AZOBR_RS04660at 982.621 kb on - strandat 982.632 kb on - strand, within AZOBR_RS04665at 983.274 kb on - strandat 983.363 kb on + strandat 983.363 kb on + strandat 983.464 kb on - strandat 983.594 kb on - strand, within AZOBR_RS04670at 983.642 kb on + strand, within AZOBR_RS04670at 983.753 kb on + strand, within AZOBR_RS04670at 983.754 kb on - strand, within AZOBR_RS04670at 983.906 kb on + strand, within AZOBR_RS04670at 983.906 kb on + strand, within AZOBR_RS04670at 983.906 kb on + strand, within AZOBR_RS04670at 983.907 kb on - strand, within AZOBR_RS04670at 983.984 kb on + strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 983.985 kb on - strandat 984.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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981,556 + AZOBR_RS04660 0.38 +1.2
981,556 + AZOBR_RS04660 0.38 -2.8
981,556 + AZOBR_RS04660 0.38 +0.7
981,844 + AZOBR_RS04660 0.72 -0.4
982,621 - +0.6
982,632 - AZOBR_RS04665 0.33 -0.4
983,274 - -1.1
983,363 + -2.4
983,363 + -2.6
983,464 - +0.6
983,594 - AZOBR_RS04670 0.19 -0.5
983,642 + AZOBR_RS04670 0.30 +0.6
983,753 + AZOBR_RS04670 0.55 -0.0
983,754 - AZOBR_RS04670 0.55 +0.5
983,906 + AZOBR_RS04670 0.89 -0.5
983,906 + AZOBR_RS04670 0.89 -0.7
983,906 + AZOBR_RS04670 0.89 -1.1
983,907 - AZOBR_RS04670 0.89 +0.2
983,984 + +0.2
983,985 - +2.5
983,985 - +0.6
983,985 - +1.8
983,985 - -0.1
983,985 - +0.7
983,985 - -0.7
984,128 + +0.1

Or see this region's nucleotide sequence