Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03380

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotidesAZOBR_RS03380 and AZOBR_RS03385 are separated by 230 nucleotides AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191 _RS03375 AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600 _RS03380 AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276 _RS03385 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1 2at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.651 kb on - strand, within AZOBR_RS03375at 715.743 kb on + strand, within AZOBR_RS03375at 715.750 kb on - strand, within AZOBR_RS03375at 715.822 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 716.179 kb on - strandat 716.351 kb on + strandat 716.351 kb on + strandat 716.351 kb on + strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.957 kb on + strand, within AZOBR_RS03380at 716.957 kb on + strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 717.549 kb on - strandat 717.549 kb on - strandat 717.600 kb on + strandat 717.600 kb on + strandat 717.600 kb on + strandat 717.601 kb on - strandat 717.601 kb on - strandat 717.618 kb on + strandat 717.618 kb on + strandat 717.619 kb on - strandat 717.905 kb on - strandat 718.051 kb on + strand, within AZOBR_RS03385at 718.051 kb on + strand, within AZOBR_RS03385at 718.052 kb on - strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.213 kb on + strand, within AZOBR_RS03385at 718.214 kb on - strand, within AZOBR_RS03385at 718.214 kb on - strand, within AZOBR_RS03385at 718.214 kb on - strand, within AZOBR_RS03385at 718.415 kb on - strand, within AZOBR_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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715,452 + AZOBR_RS03375 0.26 -0.9
715,452 + AZOBR_RS03375 0.26 +0.3
715,452 + AZOBR_RS03375 0.26 -0.2
715,452 + AZOBR_RS03375 0.26 -1.1
715,452 + AZOBR_RS03375 0.26 -0.9
715,452 + AZOBR_RS03375 0.26 +0.3
715,452 + AZOBR_RS03375 0.26 -1.5
715,453 - AZOBR_RS03375 0.26 +0.0
715,453 - AZOBR_RS03375 0.26 -1.1
715,453 - AZOBR_RS03375 0.26 -0.1
715,453 - AZOBR_RS03375 0.26 -2.1
715,651 - AZOBR_RS03375 0.46 -0.5
715,743 + AZOBR_RS03375 0.55 +1.3
715,750 - AZOBR_RS03375 0.56 -1.3
715,822 - AZOBR_RS03375 0.63 -1.5
715,936 - AZOBR_RS03375 0.74 -0.6
715,936 - AZOBR_RS03375 0.74 +1.0
715,936 - AZOBR_RS03375 0.74 -1.7
716,179 - -1.2
716,351 + +1.5
716,351 + +1.3
716,351 + -1.3
716,352 - +1.2
716,352 - +1.5
716,352 - -0.7
716,352 - -1.0
716,957 + AZOBR_RS03380 0.53 +0.5
716,957 + AZOBR_RS03380 0.53 -1.6
716,958 - AZOBR_RS03380 0.53 +0.1
716,958 - AZOBR_RS03380 0.53 -2.5
716,958 - AZOBR_RS03380 0.53 +1.6
717,549 - -1.5
717,549 - +0.4
717,600 + -1.7
717,600 + +0.5
717,600 + -0.3
717,601 - +1.8
717,601 - -0.7
717,618 + +0.3
717,618 + -0.3
717,619 - -0.4
717,905 - +0.8
718,051 + AZOBR_RS03385 0.15 +0.9
718,051 + AZOBR_RS03385 0.15 +1.6
718,052 - AZOBR_RS03385 0.15 -0.2
718,213 + AZOBR_RS03385 0.26 +0.9
718,213 + AZOBR_RS03385 0.26 -0.1
718,213 + AZOBR_RS03385 0.26 +1.5
718,213 + AZOBR_RS03385 0.26 +0.9
718,214 - AZOBR_RS03385 0.26 -1.6
718,214 - AZOBR_RS03385 0.26 +0.1
718,214 - AZOBR_RS03385 0.26 +1.2
718,415 - AZOBR_RS03385 0.40 +0.1

Or see this region's nucleotide sequence