Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02985

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02980 and AZOBR_RS02985 are separated by 248 nucleotidesAZOBR_RS02985 and AZOBR_RS02990 are separated by 357 nucleotides AZOBR_RS02980: AZOBR_RS02980 - ABC transporter permease, at 631,968 to 633,296 _RS02980 AZOBR_RS02985: AZOBR_RS02985 - aconitate hydratase, at 633,545 to 636,235 _RS02985 AZOBR_RS02990: AZOBR_RS02990 - hypothetical protein, at 636,593 to 638,194 _RS02990 Position (kb) 633 634 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 632.743 kb on + strand, within AZOBR_RS02980at 632.743 kb on + strand, within AZOBR_RS02980at 632.744 kb on - strand, within AZOBR_RS02980at 632.750 kb on - strand, within AZOBR_RS02980at 632.750 kb on - strand, within AZOBR_RS02980at 632.750 kb on - strand, within AZOBR_RS02980at 632.750 kb on - strand, within AZOBR_RS02980at 632.833 kb on + strand, within AZOBR_RS02980at 632.834 kb on - strand, within AZOBR_RS02980at 632.834 kb on - strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.950 kb on + strand, within AZOBR_RS02980at 632.951 kb on - strand, within AZOBR_RS02980at 633.020 kb on - strand, within AZOBR_RS02980at 633.046 kb on + strand, within AZOBR_RS02980at 633.047 kb on - strand, within AZOBR_RS02980at 633.047 kb on - strand, within AZOBR_RS02980at 633.121 kb on + strand, within AZOBR_RS02980at 633.122 kb on - strand, within AZOBR_RS02980at 633.366 kb on + strandat 633.367 kb on - strandat 633.370 kb on - strandat 633.468 kb on + strandat 633.469 kb on - strandat 633.611 kb on + strandat 633.612 kb on - strandat 633.618 kb on - strandat 633.675 kb on - strandat 633.960 kb on - strand, within AZOBR_RS02985at 634.115 kb on + strand, within AZOBR_RS02985at 634.115 kb on + strand, within AZOBR_RS02985at 634.421 kb on + strand, within AZOBR_RS02985at 634.422 kb on - strand, within AZOBR_RS02985at 634.487 kb on + strand, within AZOBR_RS02985at 634.488 kb on - strand, within AZOBR_RS02985at 634.535 kb on + strand, within AZOBR_RS02985at 634.811 kb on + strand, within AZOBR_RS02985at 634.812 kb on - strand, within AZOBR_RS02985at 634.988 kb on + strand, within AZOBR_RS02985at 634.988 kb on + strand, within AZOBR_RS02985at 635.195 kb on + strand, within AZOBR_RS02985at 635.195 kb on + strand, within AZOBR_RS02985at 635.195 kb on + strand, within AZOBR_RS02985at 635.196 kb on - strand, within AZOBR_RS02985at 635.196 kb on - strand, within AZOBR_RS02985at 635.196 kb on - strand, within AZOBR_RS02985at 635.196 kb on - strand, within AZOBR_RS02985at 635.196 kb on - strand, within AZOBR_RS02985at 635.225 kb on + strand, within AZOBR_RS02985at 635.300 kb on + strand, within AZOBR_RS02985at 635.447 kb on + strand, within AZOBR_RS02985at 635.448 kb on - strand, within AZOBR_RS02985at 635.471 kb on + strand, within AZOBR_RS02985at 635.471 kb on + strand, within AZOBR_RS02985at 635.471 kb on + strand, within AZOBR_RS02985at 635.471 kb on + strand, within AZOBR_RS02985at 635.471 kb on + strand, within AZOBR_RS02985at 635.472 kb on - strand, within AZOBR_RS02985at 635.472 kb on - strand, within AZOBR_RS02985at 635.472 kb on - strand, within AZOBR_RS02985at 635.631 kb on - strand, within AZOBR_RS02985at 635.631 kb on - strand, within AZOBR_RS02985at 635.780 kb on + strand, within AZOBR_RS02985at 635.781 kb on - strand, within AZOBR_RS02985at 635.807 kb on + strand, within AZOBR_RS02985at 635.825 kb on + strand, within AZOBR_RS02985at 635.825 kb on + strand, within AZOBR_RS02985at 635.870 kb on + strand, within AZOBR_RS02985at 636.069 kb on + strandat 636.070 kb on - strandat 636.070 kb on - strandat 636.070 kb on - strandat 636.070 kb on - strandat 636.163 kb on + strandat 636.164 kb on - strandat 636.164 kb on - strandat 636.182 kb on + strandat 636.306 kb on + strandat 636.306 kb on + strandat 636.307 kb on - strandat 636.396 kb on + strandat 636.397 kb on - strandat 636.463 kb on - strandat 636.463 kb on - strandat 636.541 kb on - strandat 636.564 kb on + strandat 636.564 kb on + strandat 636.564 kb on + strandat 636.564 kb on + strandat 636.565 kb on - strandat 636.565 kb on - strandat 636.696 kb on + strandat 636.696 kb on + strandat 636.696 kb on + strandat 636.697 kb on - strandat 636.697 kb on - strandat 636.697 kb on - strandat 636.697 kb on - strandat 637.027 kb on - strand, within AZOBR_RS02990

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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632,743 + AZOBR_RS02980 0.58 +3.3
632,743 + AZOBR_RS02980 0.58 -0.2
632,744 - AZOBR_RS02980 0.58 -0.7
632,750 - AZOBR_RS02980 0.59 +0.8
632,750 - AZOBR_RS02980 0.59 +1.7
632,750 - AZOBR_RS02980 0.59 -0.7
632,750 - AZOBR_RS02980 0.59 +0.3
632,833 + AZOBR_RS02980 0.65 -1.3
632,834 - AZOBR_RS02980 0.65 +1.0
632,834 - AZOBR_RS02980 0.65 +0.2
632,950 + AZOBR_RS02980 0.74 -0.5
632,950 + AZOBR_RS02980 0.74 -0.4
632,950 + AZOBR_RS02980 0.74 +0.3
632,950 + AZOBR_RS02980 0.74 +0.2
632,950 + AZOBR_RS02980 0.74 -0.5
632,950 + AZOBR_RS02980 0.74 -0.3
632,950 + AZOBR_RS02980 0.74 -0.3
632,951 - AZOBR_RS02980 0.74 +0.4
633,020 - AZOBR_RS02980 0.79 -0.6
633,046 + AZOBR_RS02980 0.81 -3.2
633,047 - AZOBR_RS02980 0.81 -1.8
633,047 - AZOBR_RS02980 0.81 -2.5
633,121 + AZOBR_RS02980 0.87 +0.4
633,122 - AZOBR_RS02980 0.87 +0.5
633,366 + -0.8
633,367 - +0.3
633,370 - -1.1
633,468 + +0.5
633,469 - +0.5
633,611 + -0.4
633,612 - +0.2
633,618 - +2.5
633,675 - -0.4
633,960 - AZOBR_RS02985 0.15 +0.6
634,115 + AZOBR_RS02985 0.21 -1.1
634,115 + AZOBR_RS02985 0.21 +0.1
634,421 + AZOBR_RS02985 0.33 +0.1
634,422 - AZOBR_RS02985 0.33 +0.5
634,487 + AZOBR_RS02985 0.35 -2.1
634,488 - AZOBR_RS02985 0.35 -1.3
634,535 + AZOBR_RS02985 0.37 -1.1
634,811 + AZOBR_RS02985 0.47 -0.5
634,812 - AZOBR_RS02985 0.47 +0.5
634,988 + AZOBR_RS02985 0.54 -0.4
634,988 + AZOBR_RS02985 0.54 +0.3
635,195 + AZOBR_RS02985 0.61 +0.2
635,195 + AZOBR_RS02985 0.61 -0.1
635,195 + AZOBR_RS02985 0.61 +0.1
635,196 - AZOBR_RS02985 0.61 +0.2
635,196 - AZOBR_RS02985 0.61 -0.1
635,196 - AZOBR_RS02985 0.61 +0.6
635,196 - AZOBR_RS02985 0.61 -0.4
635,196 - AZOBR_RS02985 0.61 -0.0
635,225 + AZOBR_RS02985 0.62 +2.5
635,300 + AZOBR_RS02985 0.65 -2.7
635,447 + AZOBR_RS02985 0.71 +1.0
635,448 - AZOBR_RS02985 0.71 +2.1
635,471 + AZOBR_RS02985 0.72 -0.5
635,471 + AZOBR_RS02985 0.72 +0.8
635,471 + AZOBR_RS02985 0.72 +0.2
635,471 + AZOBR_RS02985 0.72 +0.2
635,471 + AZOBR_RS02985 0.72 +0.8
635,472 - AZOBR_RS02985 0.72 +0.0
635,472 - AZOBR_RS02985 0.72 -0.3
635,472 - AZOBR_RS02985 0.72 +1.2
635,631 - AZOBR_RS02985 0.78 +1.0
635,631 - AZOBR_RS02985 0.78 -0.2
635,780 + AZOBR_RS02985 0.83 +0.5
635,781 - AZOBR_RS02985 0.83 -2.3
635,807 + AZOBR_RS02985 0.84 -0.5
635,825 + AZOBR_RS02985 0.85 +1.5
635,825 + AZOBR_RS02985 0.85 +0.0
635,870 + AZOBR_RS02985 0.86 -0.5
636,069 + -1.8
636,070 - +0.4
636,070 - -0.0
636,070 - +1.6
636,070 - -1.1
636,163 + +0.4
636,164 - -1.7
636,164 - +1.7
636,182 + +0.8
636,306 + +0.7
636,306 + +0.4
636,307 - +0.8
636,396 + +0.0
636,397 - +0.0
636,463 - +0.2
636,463 - +2.9
636,541 - +0.6
636,564 + -1.9
636,564 + -0.1
636,564 + +1.4
636,564 + -1.2
636,565 - -0.5
636,565 - -0.3
636,696 + -0.9
636,696 + +0.1
636,696 + +0.3
636,697 - -0.3
636,697 - -2.2
636,697 - -1.1
636,697 - -1.5
637,027 - AZOBR_RS02990 0.27 -0.4

Or see this region's nucleotide sequence