Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02455 and AZOBR_RS02460 are separated by 399 nucleotides AZOBR_RS02460 and AZOBR_RS02465 are separated by 221 nucleotides
AZOBR_RS02455: AZOBR_RS02455 - conserved membrane protein of unknown function, at 507,990 to 508,700
_RS02455
AZOBR_RS02460: AZOBR_RS02460 - phospholipase, at 509,100 to 511,259
_RS02460
AZOBR_RS02465: AZOBR_RS02465 - endonuclease, at 511,481 to 512,191
_RS02465
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 508.956 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 509.175 kb on + strand at 509.223 kb on + strand at 509.223 kb on + strand at 509.223 kb on + strand at 509.223 kb on + strand at 509.223 kb on + strand at 509.224 kb on - strand at 509.224 kb on - strand at 509.224 kb on - strand at 509.224 kb on - strand at 509.613 kb on + strand, within AZOBR_RS02460 at 509.896 kb on - strand, within AZOBR_RS02460 at 509.970 kb on + strand, within AZOBR_RS02460 at 509.970 kb on + strand, within AZOBR_RS02460 at 509.971 kb on - strand, within AZOBR_RS02460 at 509.985 kb on + strand, within AZOBR_RS02460 at 510.171 kb on + strand, within AZOBR_RS02460 at 510.171 kb on + strand, within AZOBR_RS02460 at 510.171 kb on + strand, within AZOBR_RS02460 at 510.221 kb on + strand, within AZOBR_RS02460 at 510.221 kb on + strand, within AZOBR_RS02460 at 510.221 kb on + strand, within AZOBR_RS02460 at 510.222 kb on - strand, within AZOBR_RS02460 at 510.222 kb on - strand, within AZOBR_RS02460 at 510.828 kb on + strand, within AZOBR_RS02460 at 510.828 kb on + strand, within AZOBR_RS02460 at 510.828 kb on + strand, within AZOBR_RS02460 at 510.829 kb on - strand, within AZOBR_RS02460 at 510.829 kb on - strand, within AZOBR_RS02460 at 510.829 kb on - strand, within AZOBR_RS02460 at 511.140 kb on + strand at 511.141 kb on - strand at 511.141 kb on - strand at 512.084 kb on + strand, within AZOBR_RS02465 at 512.114 kb on + strand, within AZOBR_RS02465 at 512.115 kb on - strand, within AZOBR_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 508,956 + +0.2 508,957 + -1.3 508,957 + -0.6 508,957 + -0.6 508,957 + +0.2 508,957 + +0.2 508,958 - -0.5 508,958 - -2.6 508,958 - -0.6 508,958 - -2.1 508,958 - -1.7 509,175 + +2.6 509,223 + +1.3 509,223 + +0.0 509,223 + +0.2 509,223 + -0.7 509,223 + -1.1 509,224 - +1.4 509,224 - -0.7 509,224 - +1.6 509,224 - -1.9 509,613 + AZOBR_RS02460 0.24 +1.0 509,896 - AZOBR_RS02460 0.37 -0.3 509,970 + AZOBR_RS02460 0.40 +0.6 509,970 + AZOBR_RS02460 0.40 +0.2 509,971 - AZOBR_RS02460 0.40 -0.4 509,985 + AZOBR_RS02460 0.41 +0.2 510,171 + AZOBR_RS02460 0.50 +0.2 510,171 + AZOBR_RS02460 0.50 +0.8 510,171 + AZOBR_RS02460 0.50 +2.1 510,221 + AZOBR_RS02460 0.52 +1.2 510,221 + AZOBR_RS02460 0.52 -0.3 510,221 + AZOBR_RS02460 0.52 +0.4 510,222 - AZOBR_RS02460 0.52 +0.6 510,222 - AZOBR_RS02460 0.52 -0.6 510,828 + AZOBR_RS02460 0.80 +0.7 510,828 + AZOBR_RS02460 0.80 +0.2 510,828 + AZOBR_RS02460 0.80 +1.5 510,829 - AZOBR_RS02460 0.80 -1.7 510,829 - AZOBR_RS02460 0.80 -0.3 510,829 - AZOBR_RS02460 0.80 +0.2 511,140 + +0.7 511,141 - +2.6 511,141 - -0.7 512,084 + AZOBR_RS02465 0.85 -0.8 512,114 + AZOBR_RS02465 0.89 +0.1 512,115 - AZOBR_RS02465 0.89 -0.2
Or see this region's nucleotide sequence