Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02205 and AZOBR_RS02210 are separated by 165 nucleotides AZOBR_RS02210 and AZOBR_RS02215 are separated by 79 nucleotides AZOBR_RS02215 and AZOBR_RS02220 are separated by 293 nucleotides
AZOBR_RS02205: AZOBR_RS02205 - ribonuclease PH, at 452,427 to 453,146
_RS02205
AZOBR_RS02210: AZOBR_RS02210 - HrcA family transcriptional regulator, at 453,312 to 454,352
_RS02210
AZOBR_RS02215: AZOBR_RS02215 - co-chaperone GrpE, at 454,432 to 455,055
_RS02215
AZOBR_RS02220: AZOBR_RS02220 - chemotaxis protein CheY, at 455,349 to 455,714
_RS02220
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 452.428 kb on + strand at 452.428 kb on + strand at 452.428 kb on + strand at 452.429 kb on - strand at 452.429 kb on - strand at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 453.186 kb on + strand at 453.186 kb on + strand at 453.187 kb on - strand at 453.187 kb on - strand at 453.255 kb on - strand at 453.369 kb on + strand at 453.369 kb on + strand at 453.369 kb on + strand at 453.370 kb on - strand at 453.370 kb on - strand at 453.370 kb on - strand at 453.486 kb on + strand, within AZOBR_RS02210 at 453.486 kb on + strand, within AZOBR_RS02210 at 453.487 kb on - strand, within AZOBR_RS02210 at 454.290 kb on + strand at 454.290 kb on + strand at 454.291 kb on - strand at 454.291 kb on - strand at 454.317 kb on + strand at 454.317 kb on + strand at 454.318 kb on - strand at 454.319 kb on + strand at 454.319 kb on + strand at 454.320 kb on - strand at 454.320 kb on - strand at 454.320 kb on - strand at 454.320 kb on - strand at 454.320 kb on - strand at 454.320 kb on - strand at 455.073 kb on - strand at 455.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 452,428 + +0.3 452,428 + -0.2 452,428 + +0.4 452,429 - +0.3 452,429 - -1.5 452,647 + AZOBR_RS02205 0.31 -2.1 452,647 + AZOBR_RS02205 0.31 -0.6 452,647 + AZOBR_RS02205 0.31 +1.6 452,647 + AZOBR_RS02205 0.31 +2.6 452,647 + AZOBR_RS02205 0.31 -0.2 452,647 + AZOBR_RS02205 0.31 -0.0 453,186 + -2.5 453,186 + +1.0 453,187 - -0.9 453,187 - -2.8 453,255 - -1.5 453,369 + -0.6 453,369 + +2.0 453,369 + -1.4 453,370 - -0.5 453,370 - -1.4 453,370 - -2.8 453,486 + AZOBR_RS02210 0.17 -1.2 453,486 + AZOBR_RS02210 0.17 +1.2 453,487 - AZOBR_RS02210 0.17 +0.1 454,290 + -1.9 454,290 + -1.0 454,291 - -0.4 454,291 - -1.7 454,317 + +0.4 454,317 + -1.4 454,318 - -1.2 454,319 + -2.7 454,319 + -0.8 454,320 - -0.0 454,320 - -1.1 454,320 - +2.8 454,320 - +0.4 454,320 - +2.2 454,320 - -1.5 455,073 - +0.2 455,255 + -0.5
Or see this region's nucleotide sequence