Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01305

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS01300 and AZOBR_RS01305 are separated by 148 nucleotidesAZOBR_RS01305 and AZOBR_RS01310 are separated by 93 nucleotides AZOBR_RS01300: AZOBR_RS01300 - peptide ABC transporter substrate-binding protein, at 269,287 to 271,095 _RS01300 AZOBR_RS01305: AZOBR_RS01305 - inorganic pyrophosphatase, at 271,244 to 271,801 _RS01305 AZOBR_RS01310: AZOBR_RS01310 - lactate dehydrogenase, at 271,895 to 272,836 _RS01310 Position (kb) 271 272Strain fitness (log2 ratio) -2 -1 0 1at 270.314 kb on + strand, within AZOBR_RS01300at 270.314 kb on + strand, within AZOBR_RS01300at 270.315 kb on - strand, within AZOBR_RS01300at 270.377 kb on + strand, within AZOBR_RS01300at 270.378 kb on - strand, within AZOBR_RS01300at 270.626 kb on + strand, within AZOBR_RS01300at 270.626 kb on + strand, within AZOBR_RS01300at 270.626 kb on + strand, within AZOBR_RS01300at 270.795 kb on - strand, within AZOBR_RS01300at 270.983 kb on + strandat 271.142 kb on + strandat 272.184 kb on + strand, within AZOBR_RS01310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
270,314 + AZOBR_RS01300 0.57 +1.4
270,314 + AZOBR_RS01300 0.57 +0.4
270,315 - AZOBR_RS01300 0.57 +1.6
270,377 + AZOBR_RS01300 0.60 -0.8
270,378 - AZOBR_RS01300 0.60 -0.2
270,626 + AZOBR_RS01300 0.74 +1.1
270,626 + AZOBR_RS01300 0.74 -0.5
270,626 + AZOBR_RS01300 0.74 +0.3
270,795 - AZOBR_RS01300 0.83 +1.0
270,983 + -0.3
271,142 + +0.0
272,184 + AZOBR_RS01310 0.31 -2.2

Or see this region's nucleotide sequence