Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01105 and AZOBR_RS01110 are separated by 160 nucleotides AZOBR_RS01110 and AZOBR_RS01115 are separated by 45 nucleotides AZOBR_RS01115 and AZOBR_RS01120 are separated by 4 nucleotides
AZOBR_RS01105: AZOBR_RS01105 - PhoB family transcriptional regulator, at 223,592 to 224,296
_RS01105
AZOBR_RS01110: AZOBR_RS01110 - PhoU family transcriptional regulator, at 224,457 to 225,128
_RS01110
AZOBR_RS01115: AZOBR_RS01115 - phosphate ABC transporter ATP-binding protein, at 225,174 to 225,992
_RS01115
AZOBR_RS01120: AZOBR_RS01120 - phosphate ABC transporter permease, at 225,997 to 227,262
_RS01120
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.557 kb on - strand at 223.719 kb on + strand, within AZOBR_RS01105 at 223.719 kb on + strand, within AZOBR_RS01105 at 223.719 kb on + strand, within AZOBR_RS01105 at 223.719 kb on + strand, within AZOBR_RS01105 at 223.720 kb on - strand, within AZOBR_RS01105 at 223.720 kb on - strand, within AZOBR_RS01105 at 223.980 kb on + strand, within AZOBR_RS01105 at 223.980 kb on + strand, within AZOBR_RS01105 at 223.980 kb on + strand, within AZOBR_RS01105 at 223.980 kb on + strand, within AZOBR_RS01105 at 223.980 kb on + strand, within AZOBR_RS01105 at 224.226 kb on + strand at 224.227 kb on - strand at 224.227 kb on - strand at 224.497 kb on + strand at 224.497 kb on + strand at 224.608 kb on + strand, within AZOBR_RS01110 at 224.608 kb on + strand, within AZOBR_RS01110 at 224.608 kb on + strand, within AZOBR_RS01110 at 224.609 kb on - strand, within AZOBR_RS01110 at 224.609 kb on - strand, within AZOBR_RS01110 at 224.639 kb on - strand, within AZOBR_RS01110 at 224.704 kb on + strand, within AZOBR_RS01110 at 224.827 kb on + strand, within AZOBR_RS01110 at 224.827 kb on + strand, within AZOBR_RS01110 at 224.828 kb on - strand, within AZOBR_RS01110 at 224.950 kb on + strand, within AZOBR_RS01110 at 224.951 kb on - strand, within AZOBR_RS01110 at 225.196 kb on + strand at 225.197 kb on - strand at 225.340 kb on + strand, within AZOBR_RS01115 at 225.340 kb on + strand, within AZOBR_RS01115 at 225.340 kb on + strand, within AZOBR_RS01115 at 225.341 kb on - strand, within AZOBR_RS01115 at 225.712 kb on + strand, within AZOBR_RS01115 at 225.713 kb on - strand, within AZOBR_RS01115 at 225.892 kb on + strand, within AZOBR_RS01115 at 225.892 kb on + strand, within AZOBR_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 223,557 - -1.6 223,719 + AZOBR_RS01105 0.18 -1.8 223,719 + AZOBR_RS01105 0.18 +1.5 223,719 + AZOBR_RS01105 0.18 +0.3 223,719 + AZOBR_RS01105 0.18 -0.3 223,720 - AZOBR_RS01105 0.18 -1.4 223,720 - AZOBR_RS01105 0.18 -0.4 223,980 + AZOBR_RS01105 0.55 -1.0 223,980 + AZOBR_RS01105 0.55 -0.0 223,980 + AZOBR_RS01105 0.55 -0.9 223,980 + AZOBR_RS01105 0.55 -1.8 223,980 + AZOBR_RS01105 0.55 +0.0 224,226 + +0.1 224,227 - -0.4 224,227 - -0.1 224,497 + -1.1 224,497 + -0.4 224,608 + AZOBR_RS01110 0.22 +0.0 224,608 + AZOBR_RS01110 0.22 -0.7 224,608 + AZOBR_RS01110 0.22 +0.1 224,609 - AZOBR_RS01110 0.23 -0.2 224,609 - AZOBR_RS01110 0.23 +0.7 224,639 - AZOBR_RS01110 0.27 +2.1 224,704 + AZOBR_RS01110 0.37 +0.3 224,827 + AZOBR_RS01110 0.55 +1.6 224,827 + AZOBR_RS01110 0.55 +0.1 224,828 - AZOBR_RS01110 0.55 +0.6 224,950 + AZOBR_RS01110 0.73 -1.6 224,951 - AZOBR_RS01110 0.74 -0.4 225,196 + +0.2 225,197 - -0.7 225,340 + AZOBR_RS01115 0.20 -1.9 225,340 + AZOBR_RS01115 0.20 -0.6 225,340 + AZOBR_RS01115 0.20 -0.2 225,341 - AZOBR_RS01115 0.20 -0.2 225,712 + AZOBR_RS01115 0.66 -2.5 225,713 - AZOBR_RS01115 0.66 -1.4 225,892 + AZOBR_RS01115 0.88 +2.3 225,892 + AZOBR_RS01115 0.88 +1.6
Or see this region's nucleotide sequence