Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17765 and ABZR87_RS17770 are separated by 195 nucleotides ABZR87_RS17770 and ABZR87_RS17775 are separated by 22 nucleotides
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668
_RS17770
ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908
_RS17775
Position (kb) 347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand at 346.451 kb on - strand, within ABZR87_RS17765 at 346.644 kb on - strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.787 kb on - strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.819 kb on - strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 347.105 kb on - strand at 347.163 kb on + strand at 347.205 kb on - strand at 347.558 kb on + strand, within ABZR87_RS17770 at 347.558 kb on + strand, within ABZR87_RS17770 at 347.559 kb on - strand, within ABZR87_RS17770 at 347.629 kb on - strand, within ABZR87_RS17770 at 347.775 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.070 kb on - strand, within ABZR87_RS17770 at 348.219 kb on + strand, within ABZR87_RS17770 at 348.380 kb on - strand, within ABZR87_RS17770 at 348.591 kb on + strand at 348.591 kb on + strand at 348.690 kb on + strand at 348.690 kb on + strand at 348.691 kb on - strand at 348.696 kb on + strand at 348.696 kb on + strand at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 349.153 kb on + strand, within ABZR87_RS17775 at 349.154 kb on - strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.157 kb on - strand, within ABZR87_RS17775 at 349.183 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 346,343 - -1.2 346,381 + -0.7 346,382 - -0.5 346,451 - ABZR87_RS17765 0.17 -1.9 346,644 - ABZR87_RS17765 0.41 +0.1 346,774 + ABZR87_RS17765 0.57 -0.7 346,774 + ABZR87_RS17765 0.57 +0.9 346,787 - ABZR87_RS17765 0.58 -0.7 346,818 + ABZR87_RS17765 0.62 -0.2 346,818 + ABZR87_RS17765 0.62 -0.7 346,818 + ABZR87_RS17765 0.62 -0.1 346,819 - ABZR87_RS17765 0.62 +0.0 346,834 + ABZR87_RS17765 0.64 +0.4 346,834 + ABZR87_RS17765 0.64 +0.0 346,834 + ABZR87_RS17765 0.64 -2.2 347,105 - +0.6 347,163 + -2.8 347,205 - +0.6 347,558 + ABZR87_RS17770 0.18 -0.0 347,558 + ABZR87_RS17770 0.18 -0.6 347,559 - ABZR87_RS17770 0.18 -1.0 347,629 - ABZR87_RS17770 0.23 -2.7 347,775 + ABZR87_RS17770 0.34 -1.1 348,069 + ABZR87_RS17770 0.55 +0.1 348,069 + ABZR87_RS17770 0.55 +0.4 348,070 - ABZR87_RS17770 0.56 -0.6 348,219 + ABZR87_RS17770 0.67 -0.8 348,380 - ABZR87_RS17770 0.79 +1.4 348,591 + +0.6 348,591 + +0.4 348,690 + -1.6 348,690 + +0.8 348,691 - -0.2 348,696 + -0.1 348,696 + +0.1 348,970 + ABZR87_RS17775 0.23 -0.4 348,970 + ABZR87_RS17775 0.23 -0.2 348,970 + ABZR87_RS17775 0.23 -0.4 348,970 + ABZR87_RS17775 0.23 +0.4 348,970 + ABZR87_RS17775 0.23 -0.7 349,153 + ABZR87_RS17775 0.38 +0.4 349,154 - ABZR87_RS17775 0.38 -0.2 349,156 + ABZR87_RS17775 0.38 +0.4 349,156 + ABZR87_RS17775 0.38 -2.1 349,157 - ABZR87_RS17775 0.38 +0.2 349,183 + ABZR87_RS17775 0.40 +0.1 349,465 + ABZR87_RS17775 0.64 -1.5 349,465 + ABZR87_RS17775 0.64 +1.0 349,465 + ABZR87_RS17775 0.64 +1.8 349,466 - ABZR87_RS17775 0.64 +0.7 349,466 - ABZR87_RS17775 0.64 -0.4
Or see this region's nucleotide sequence