Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17160 and ABZR87_RS17165 are separated by 315 nucleotides ABZR87_RS17165 and ABZR87_RS17170 are separated by 131 nucleotides ABZR87_RS17170 and ABZR87_RS17175 are separated by 19 nucleotides
ABZR87_RS17160: ABZR87_RS17160 - ABC transporter substrate-binding protein, at 194,879 to 195,766
_RS17160
ABZR87_RS17165: ABZR87_RS17165 - diguanylate cyclase, at 196,082 to 197,731
_RS17165
ABZR87_RS17170: ABZR87_RS17170 - acyl-CoA thioesterase, at 197,863 to 198,369
_RS17170
ABZR87_RS17175: ABZR87_RS17175 - sensor histidine kinase, at 198,389 to 199,774
_RS17175
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 195.195 kb on + strand, within ABZR87_RS17160 at 195.195 kb on + strand, within ABZR87_RS17160 at 195.196 kb on - strand, within ABZR87_RS17160 at 195.196 kb on - strand, within ABZR87_RS17160 at 195.215 kb on - strand, within ABZR87_RS17160 at 195.220 kb on - strand, within ABZR87_RS17160 at 195.308 kb on + strand, within ABZR87_RS17160 at 195.308 kb on + strand, within ABZR87_RS17160 at 195.308 kb on + strand, within ABZR87_RS17160 at 195.308 kb on + strand, within ABZR87_RS17160 at 195.308 kb on + strand, within ABZR87_RS17160 at 195.308 kb on + strand, within ABZR87_RS17160 at 195.309 kb on - strand, within ABZR87_RS17160 at 195.309 kb on - strand, within ABZR87_RS17160 at 195.309 kb on - strand, within ABZR87_RS17160 at 195.309 kb on - strand, within ABZR87_RS17160 at 195.348 kb on + strand, within ABZR87_RS17160 at 195.348 kb on + strand, within ABZR87_RS17160 at 195.349 kb on - strand, within ABZR87_RS17160 at 195.511 kb on - strand, within ABZR87_RS17160 at 195.801 kb on + strand at 195.844 kb on + strand at 195.846 kb on + strand at 195.848 kb on + strand at 195.848 kb on + strand at 195.848 kb on + strand at 195.848 kb on + strand at 195.848 kb on + strand at 195.848 kb on + strand at 195.848 kb on + strand at 195.849 kb on - strand at 195.849 kb on - strand at 195.849 kb on - strand at 195.926 kb on - strand at 195.939 kb on - strand at 195.985 kb on - strand at 196.015 kb on + strand at 196.015 kb on + strand at 196.016 kb on - strand at 196.016 kb on - strand at 196.277 kb on + strand, within ABZR87_RS17165 at 196.278 kb on - strand, within ABZR87_RS17165 at 196.332 kb on + strand, within ABZR87_RS17165 at 196.332 kb on + strand, within ABZR87_RS17165 at 196.333 kb on - strand, within ABZR87_RS17165 at 196.333 kb on - strand, within ABZR87_RS17165 at 196.333 kb on - strand, within ABZR87_RS17165 at 196.333 kb on - strand, within ABZR87_RS17165 at 196.529 kb on + strand, within ABZR87_RS17165 at 196.529 kb on + strand, within ABZR87_RS17165 at 196.529 kb on + strand, within ABZR87_RS17165 at 196.530 kb on - strand, within ABZR87_RS17165 at 196.535 kb on + strand, within ABZR87_RS17165 at 196.535 kb on + strand, within ABZR87_RS17165 at 196.535 kb on + strand, within ABZR87_RS17165 at 196.535 kb on + strand, within ABZR87_RS17165 at 196.535 kb on + strand, within ABZR87_RS17165 at 196.536 kb on - strand, within ABZR87_RS17165 at 196.536 kb on - strand, within ABZR87_RS17165 at 196.536 kb on - strand, within ABZR87_RS17165 at 196.536 kb on - strand, within ABZR87_RS17165 at 196.601 kb on + strand, within ABZR87_RS17165 at 196.601 kb on + strand, within ABZR87_RS17165 at 196.601 kb on + strand, within ABZR87_RS17165 at 196.601 kb on + strand, within ABZR87_RS17165 at 196.602 kb on - strand, within ABZR87_RS17165 at 196.602 kb on - strand, within ABZR87_RS17165 at 196.677 kb on - strand, within ABZR87_RS17165 at 196.677 kb on - strand, within ABZR87_RS17165 at 196.794 kb on - strand, within ABZR87_RS17165 at 197.161 kb on + strand, within ABZR87_RS17165 at 197.330 kb on + strand, within ABZR87_RS17165 at 197.331 kb on - strand, within ABZR87_RS17165 at 197.331 kb on - strand, within ABZR87_RS17165 at 197.342 kb on + strand, within ABZR87_RS17165 at 197.342 kb on + strand, within ABZR87_RS17165 at 197.343 kb on - strand, within ABZR87_RS17165 at 197.343 kb on - strand, within ABZR87_RS17165 at 197.561 kb on + strand, within ABZR87_RS17165 at 197.561 kb on + strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.648 kb on + strand at 197.649 kb on - strand at 197.649 kb on - strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.729 kb on + strand at 197.730 kb on - strand at 197.750 kb on + strand at 197.751 kb on - strand at 197.766 kb on + strand at 197.767 kb on - strand at 197.767 kb on - strand at 197.857 kb on + strand at 197.857 kb on + strand at 197.858 kb on - strand at 197.858 kb on - strand at 197.902 kb on + strand at 197.902 kb on + strand at 197.903 kb on - strand at 197.971 kb on + strand, within ABZR87_RS17170 at 197.971 kb on + strand, within ABZR87_RS17170 at 197.971 kb on + strand, within ABZR87_RS17170 at 197.971 kb on + strand, within ABZR87_RS17170 at 197.972 kb on - strand, within ABZR87_RS17170 at 197.972 kb on - strand, within ABZR87_RS17170 at 198.000 kb on + strand, within ABZR87_RS17170 at 198.001 kb on - strand, within ABZR87_RS17170 at 198.001 kb on - strand, within ABZR87_RS17170 at 198.001 kb on - strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.202 kb on + strand, within ABZR87_RS17170 at 198.202 kb on + strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.250 kb on + strand, within ABZR87_RS17170 at 198.329 kb on - strand at 198.394 kb on + strand at 198.432 kb on + strand at 198.432 kb on + strand at 198.433 kb on - strand at 198.433 kb on - strand at 198.433 kb on - strand at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.613 kb on - strand, within ABZR87_RS17175 at 198.613 kb on - strand, within ABZR87_RS17175 at 198.613 kb on - strand, within ABZR87_RS17175 at 198.708 kb on + strand, within ABZR87_RS17175 at 198.708 kb on + strand, within ABZR87_RS17175 at 198.708 kb on + strand, within ABZR87_RS17175 at 198.709 kb on - strand, within ABZR87_RS17175 at 198.709 kb on - strand, within ABZR87_RS17175
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 195,195 + ABZR87_RS17160 0.36 -0.3 195,195 + ABZR87_RS17160 0.36 +0.1 195,196 - ABZR87_RS17160 0.36 -1.0 195,196 - ABZR87_RS17160 0.36 +0.2 195,215 - ABZR87_RS17160 0.38 -0.4 195,220 - ABZR87_RS17160 0.38 -0.1 195,308 + ABZR87_RS17160 0.48 +0.3 195,308 + ABZR87_RS17160 0.48 -0.7 195,308 + ABZR87_RS17160 0.48 +0.6 195,308 + ABZR87_RS17160 0.48 -0.6 195,308 + ABZR87_RS17160 0.48 -1.5 195,308 + ABZR87_RS17160 0.48 +0.5 195,309 - ABZR87_RS17160 0.48 -0.7 195,309 - ABZR87_RS17160 0.48 +0.2 195,309 - ABZR87_RS17160 0.48 -0.3 195,309 - ABZR87_RS17160 0.48 -0.8 195,348 + ABZR87_RS17160 0.53 -1.8 195,348 + ABZR87_RS17160 0.53 +0.3 195,349 - ABZR87_RS17160 0.53 +1.8 195,511 - ABZR87_RS17160 0.71 -0.4 195,801 + -0.3 195,844 + +0.3 195,846 + -1.0 195,848 + -1.0 195,848 + +0.6 195,848 + -1.3 195,848 + +1.3 195,848 + -2.4 195,848 + +1.1 195,848 + -0.8 195,849 - +0.2 195,849 - -0.2 195,849 - -0.4 195,926 - +0.3 195,939 - -0.2 195,985 - -0.3 196,015 + +0.1 196,015 + +0.5 196,016 - +0.7 196,016 - +1.9 196,277 + ABZR87_RS17165 0.12 -0.9 196,278 - ABZR87_RS17165 0.12 +1.6 196,332 + ABZR87_RS17165 0.15 -1.0 196,332 + ABZR87_RS17165 0.15 -0.1 196,333 - ABZR87_RS17165 0.15 +0.6 196,333 - ABZR87_RS17165 0.15 +0.3 196,333 - ABZR87_RS17165 0.15 +4.3 196,333 - ABZR87_RS17165 0.15 -1.7 196,529 + ABZR87_RS17165 0.27 +0.4 196,529 + ABZR87_RS17165 0.27 -0.7 196,529 + ABZR87_RS17165 0.27 -1.2 196,530 - ABZR87_RS17165 0.27 +0.0 196,535 + ABZR87_RS17165 0.27 -0.5 196,535 + ABZR87_RS17165 0.27 +0.7 196,535 + ABZR87_RS17165 0.27 +0.8 196,535 + ABZR87_RS17165 0.27 -0.1 196,535 + ABZR87_RS17165 0.27 +1.2 196,536 - ABZR87_RS17165 0.28 +0.4 196,536 - ABZR87_RS17165 0.28 +0.9 196,536 - ABZR87_RS17165 0.28 +0.3 196,536 - ABZR87_RS17165 0.28 -0.0 196,601 + ABZR87_RS17165 0.31 -2.6 196,601 + ABZR87_RS17165 0.31 -0.5 196,601 + ABZR87_RS17165 0.31 -0.9 196,601 + ABZR87_RS17165 0.31 -0.3 196,602 - ABZR87_RS17165 0.32 +0.1 196,602 - ABZR87_RS17165 0.32 +0.6 196,677 - ABZR87_RS17165 0.36 +1.3 196,677 - ABZR87_RS17165 0.36 +0.3 196,794 - ABZR87_RS17165 0.43 -0.5 197,161 + ABZR87_RS17165 0.65 +0.1 197,330 + ABZR87_RS17165 0.76 -0.4 197,331 - ABZR87_RS17165 0.76 -0.7 197,331 - ABZR87_RS17165 0.76 +0.5 197,342 + ABZR87_RS17165 0.76 -1.2 197,342 + ABZR87_RS17165 0.76 +0.3 197,343 - ABZR87_RS17165 0.76 +0.5 197,343 - ABZR87_RS17165 0.76 -0.2 197,561 + ABZR87_RS17165 0.90 +0.1 197,561 + ABZR87_RS17165 0.90 -0.1 197,562 - ABZR87_RS17165 0.90 +0.1 197,562 - ABZR87_RS17165 0.90 -1.5 197,562 - ABZR87_RS17165 0.90 -1.1 197,562 - ABZR87_RS17165 0.90 -0.5 197,648 + +0.5 197,649 - -2.4 197,649 - +0.6 197,674 + -0.1 197,674 + +0.6 197,674 + -0.1 197,674 + +0.6 197,729 + -0.9 197,730 - -0.4 197,750 + -0.5 197,751 - +0.9 197,766 + +0.2 197,767 - -0.0 197,767 - -2.0 197,857 + +0.1 197,857 + +0.8 197,858 - +0.2 197,858 - -1.0 197,902 + -1.7 197,902 + +1.5 197,903 - +2.0 197,971 + ABZR87_RS17170 0.21 -0.7 197,971 + ABZR87_RS17170 0.21 -0.0 197,971 + ABZR87_RS17170 0.21 -0.7 197,971 + ABZR87_RS17170 0.21 +0.2 197,972 - ABZR87_RS17170 0.21 -0.9 197,972 - ABZR87_RS17170 0.21 -0.2 198,000 + ABZR87_RS17170 0.27 +0.2 198,001 - ABZR87_RS17170 0.27 +0.6 198,001 - ABZR87_RS17170 0.27 +0.7 198,001 - ABZR87_RS17170 0.27 +0.3 198,004 + ABZR87_RS17170 0.28 +1.4 198,004 + ABZR87_RS17170 0.28 +0.1 198,004 + ABZR87_RS17170 0.28 +0.5 198,004 + ABZR87_RS17170 0.28 -2.2 198,005 - ABZR87_RS17170 0.28 +0.8 198,005 - ABZR87_RS17170 0.28 +1.0 198,005 - ABZR87_RS17170 0.28 +0.2 198,005 - ABZR87_RS17170 0.28 +0.7 198,202 + ABZR87_RS17170 0.67 -0.2 198,202 + ABZR87_RS17170 0.67 +0.1 198,203 - ABZR87_RS17170 0.67 +0.3 198,203 - ABZR87_RS17170 0.67 +0.6 198,203 - ABZR87_RS17170 0.67 -0.7 198,203 - ABZR87_RS17170 0.67 +0.6 198,250 + ABZR87_RS17170 0.76 -0.9 198,329 - -0.3 198,394 + -1.3 198,432 + +0.2 198,432 + +1.7 198,433 - -0.3 198,433 - -0.1 198,433 - -0.1 198,612 + ABZR87_RS17175 0.16 +0.3 198,612 + ABZR87_RS17175 0.16 -0.4 198,612 + ABZR87_RS17175 0.16 +0.1 198,612 + ABZR87_RS17175 0.16 -0.0 198,612 + ABZR87_RS17175 0.16 -2.3 198,612 + ABZR87_RS17175 0.16 +0.7 198,613 - ABZR87_RS17175 0.16 -0.5 198,613 - ABZR87_RS17175 0.16 +1.3 198,613 - ABZR87_RS17175 0.16 -0.9 198,708 + ABZR87_RS17175 0.23 -0.3 198,708 + ABZR87_RS17175 0.23 -1.4 198,708 + ABZR87_RS17175 0.23 +0.2 198,709 - ABZR87_RS17175 0.23 -2.3 198,709 - ABZR87_RS17175 0.23 -0.3
Or see this region's nucleotide sequence