Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16965 and ABZR87_RS16970 overlap by 4 nucleotides ABZR87_RS16970 and ABZR87_RS16975 are separated by 5 nucleotides ABZR87_RS16975 and ABZR87_RS16980 are separated by 141 nucleotides
ABZR87_RS16965: ABZR87_RS16965 - DUF72 domain-containing protein, at 160,668 to 161,543
_RS16965
ABZR87_RS16970: ABZR87_RS16970 - SIR2 family protein, at 161,540 to 162,463
_RS16970
ABZR87_RS16975: ABZR87_RS16975 - hypothetical protein, at 162,469 to 162,627
_RS16975
ABZR87_RS16980: ABZR87_RS16980 - GlxA family transcriptional regulator, at 162,769 to 163,704
_RS16980
Position (kb) 162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 161.485 kb on + strand at 161.486 kb on - strand at 161.486 kb on - strand at 161.510 kb on - strand at 161.658 kb on + strand, within ABZR87_RS16970 at 161.739 kb on + strand, within ABZR87_RS16970 at 161.739 kb on + strand, within ABZR87_RS16970 at 161.739 kb on + strand, within ABZR87_RS16970 at 161.740 kb on - strand, within ABZR87_RS16970 at 161.740 kb on - strand, within ABZR87_RS16970 at 161.772 kb on + strand, within ABZR87_RS16970 at 161.772 kb on + strand, within ABZR87_RS16970 at 161.773 kb on - strand, within ABZR87_RS16970 at 161.865 kb on + strand, within ABZR87_RS16970 at 161.865 kb on + strand, within ABZR87_RS16970 at 161.865 kb on + strand, within ABZR87_RS16970 at 161.865 kb on + strand, within ABZR87_RS16970 at 161.865 kb on + strand, within ABZR87_RS16970 at 161.866 kb on - strand, within ABZR87_RS16970 at 161.866 kb on - strand, within ABZR87_RS16970 at 161.866 kb on - strand, within ABZR87_RS16970 at 161.866 kb on - strand, within ABZR87_RS16970 at 161.878 kb on - strand, within ABZR87_RS16970 at 161.898 kb on + strand, within ABZR87_RS16970 at 161.899 kb on - strand, within ABZR87_RS16970 at 161.899 kb on - strand, within ABZR87_RS16970 at 161.899 kb on - strand, within ABZR87_RS16970 at 162.006 kb on + strand, within ABZR87_RS16970 at 162.007 kb on - strand, within ABZR87_RS16970 at 162.007 kb on - strand, within ABZR87_RS16970 at 162.057 kb on + strand, within ABZR87_RS16970 at 162.410 kb on + strand at 162.411 kb on - strand at 162.569 kb on + strand, within ABZR87_RS16975 at 162.569 kb on + strand, within ABZR87_RS16975 at 162.570 kb on - strand, within ABZR87_RS16975 at 162.570 kb on - strand, within ABZR87_RS16975 at 162.650 kb on + strand at 162.650 kb on + strand at 162.650 kb on + strand at 162.650 kb on + strand at 162.650 kb on + strand at 162.651 kb on - strand at 162.651 kb on - strand at 162.651 kb on - strand at 162.651 kb on - strand at 163.137 kb on - strand, within ABZR87_RS16980 at 163.140 kb on - strand, within ABZR87_RS16980 at 163.140 kb on - strand, within ABZR87_RS16980 at 163.171 kb on + strand, within ABZR87_RS16980 at 163.265 kb on + strand, within ABZR87_RS16980 at 163.265 kb on + strand, within ABZR87_RS16980 at 163.266 kb on - strand, within ABZR87_RS16980 at 163.266 kb on - strand, within ABZR87_RS16980 at 163.266 kb on - strand, within ABZR87_RS16980 at 163.599 kb on - strand, within ABZR87_RS16980 at 163.599 kb on - strand, within ABZR87_RS16980
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 161,485 + -0.1 161,486 - +0.5 161,486 - +0.7 161,510 - -0.0 161,658 + ABZR87_RS16970 0.13 +0.4 161,739 + ABZR87_RS16970 0.22 +0.3 161,739 + ABZR87_RS16970 0.22 -0.5 161,739 + ABZR87_RS16970 0.22 -0.7 161,740 - ABZR87_RS16970 0.22 +1.0 161,740 - ABZR87_RS16970 0.22 +0.4 161,772 + ABZR87_RS16970 0.25 -0.7 161,772 + ABZR87_RS16970 0.25 +0.5 161,773 - ABZR87_RS16970 0.25 +1.0 161,865 + ABZR87_RS16970 0.35 +1.4 161,865 + ABZR87_RS16970 0.35 -2.0 161,865 + ABZR87_RS16970 0.35 -0.5 161,865 + ABZR87_RS16970 0.35 +0.9 161,865 + ABZR87_RS16970 0.35 +1.3 161,866 - ABZR87_RS16970 0.35 -0.9 161,866 - ABZR87_RS16970 0.35 +0.3 161,866 - ABZR87_RS16970 0.35 +0.3 161,866 - ABZR87_RS16970 0.35 +0.1 161,878 - ABZR87_RS16970 0.37 +0.2 161,898 + ABZR87_RS16970 0.39 -0.6 161,899 - ABZR87_RS16970 0.39 +0.2 161,899 - ABZR87_RS16970 0.39 -0.1 161,899 - ABZR87_RS16970 0.39 +0.9 162,006 + ABZR87_RS16970 0.50 -2.3 162,007 - ABZR87_RS16970 0.51 +1.1 162,007 - ABZR87_RS16970 0.51 -0.6 162,057 + ABZR87_RS16970 0.56 +0.8 162,410 + -2.2 162,411 - -0.4 162,569 + ABZR87_RS16975 0.63 -0.9 162,569 + ABZR87_RS16975 0.63 -2.8 162,570 - ABZR87_RS16975 0.64 -0.3 162,570 - ABZR87_RS16975 0.64 -2.1 162,650 + -0.7 162,650 + +0.3 162,650 + +1.7 162,650 + +0.4 162,650 + -0.6 162,651 - -0.2 162,651 - +0.6 162,651 - +0.6 162,651 - +0.1 163,137 - ABZR87_RS16980 0.39 +0.6 163,140 - ABZR87_RS16980 0.40 -0.3 163,140 - ABZR87_RS16980 0.40 -1.2 163,171 + ABZR87_RS16980 0.43 -0.3 163,265 + ABZR87_RS16980 0.53 -1.3 163,265 + ABZR87_RS16980 0.53 +0.0 163,266 - ABZR87_RS16980 0.53 -0.1 163,266 - ABZR87_RS16980 0.53 -0.9 163,266 - ABZR87_RS16980 0.53 +0.3 163,599 - ABZR87_RS16980 0.89 -0.2 163,599 - ABZR87_RS16980 0.89 +1.3
Or see this region's nucleotide sequence