Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03355 and ABZR87_RS03360 are separated by 18 nucleotides ABZR87_RS03360 and ABZR87_RS03365 are separated by 37 nucleotides ABZR87_RS03365 and ABZR87_RS03370 are separated by 7 nucleotides ABZR87_RS03370 and ABZR87_RS03375 are separated by 56 nucleotides ABZR87_RS03375 and ABZR87_RS03380 are separated by 41 nucleotides
ABZR87_RS03355: ABZR87_RS03355 - hypothetical protein, at 705,552 to 705,965
_RS03355
ABZR87_RS03360: ABZR87_RS03360 - hypothetical protein, at 705,984 to 706,421
_RS03360
ABZR87_RS03365: ABZR87_RS03365 - SgcJ/EcaC family oxidoreductase, at 706,459 to 706,848
_RS03365
ABZR87_RS03370: ABZR87_RS03370 - hypothetical protein, at 706,856 to 707,110
_RS03370
ABZR87_RS03375: ABZR87_RS03375 - hypothetical protein, at 707,167 to 707,556
_RS03375
ABZR87_RS03380: ABZR87_RS03380 - hypothetical protein, at 707,598 to 707,867
_RS03380
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 705.857 kb on - strand, within ABZR87_RS03355 at 705.963 kb on + strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 706.029 kb on + strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.101 kb on + strand, within ABZR87_RS03360 at 706.101 kb on + strand, within ABZR87_RS03360 at 706.102 kb on - strand, within ABZR87_RS03360 at 706.119 kb on + strand, within ABZR87_RS03360 at 706.120 kb on - strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.156 kb on - strand, within ABZR87_RS03360 at 706.156 kb on - strand, within ABZR87_RS03360 at 706.246 kb on - strand, within ABZR87_RS03360 at 706.246 kb on - strand, within ABZR87_RS03360 at 706.246 kb on - strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.352 kb on + strand, within ABZR87_RS03360 at 706.363 kb on + strand, within ABZR87_RS03360 at 706.363 kb on + strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.419 kb on + strand at 706.420 kb on - strand at 706.420 kb on - strand at 706.420 kb on - strand at 706.420 kb on - strand at 706.660 kb on - strand, within ABZR87_RS03365 at 706.660 kb on - strand, within ABZR87_RS03365 at 706.693 kb on + strand, within ABZR87_RS03365 at 706.693 kb on + strand, within ABZR87_RS03365 at 706.693 kb on + strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.849 kb on + strand at 706.850 kb on - strand at 706.866 kb on + strand at 706.867 kb on - strand at 706.867 kb on - strand at 706.867 kb on - strand at 706.867 kb on - strand at 706.899 kb on + strand, within ABZR87_RS03370 at 706.900 kb on - strand, within ABZR87_RS03370 at 706.900 kb on - strand, within ABZR87_RS03370 at 706.900 kb on - strand, within ABZR87_RS03370 at 706.951 kb on - strand, within ABZR87_RS03370 at 706.951 kb on - strand, within ABZR87_RS03370 at 706.951 kb on - strand, within ABZR87_RS03370 at 706.964 kb on + strand, within ABZR87_RS03370 at 707.003 kb on + strand, within ABZR87_RS03370 at 707.044 kb on + strand, within ABZR87_RS03370 at 707.044 kb on + strand, within ABZR87_RS03370 at 707.045 kb on - strand, within ABZR87_RS03370 at 707.047 kb on - strand, within ABZR87_RS03370 at 707.050 kb on + strand, within ABZR87_RS03370 at 707.050 kb on + strand, within ABZR87_RS03370 at 707.051 kb on - strand, within ABZR87_RS03370 at 707.051 kb on - strand, within ABZR87_RS03370 at 707.051 kb on - strand, within ABZR87_RS03370 at 707.088 kb on + strand at 707.108 kb on + strand at 707.108 kb on + strand at 707.109 kb on - strand at 707.135 kb on + strand at 707.135 kb on + strand at 707.136 kb on - strand at 707.136 kb on - strand at 707.136 kb on - strand at 707.136 kb on - strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.224 kb on + strand, within ABZR87_RS03375 at 707.224 kb on + strand, within ABZR87_RS03375 at 707.230 kb on + strand, within ABZR87_RS03375 at 707.230 kb on + strand, within ABZR87_RS03375 at 707.230 kb on + strand, within ABZR87_RS03375 at 707.231 kb on - strand, within ABZR87_RS03375 at 707.231 kb on - strand, within ABZR87_RS03375 at 707.231 kb on - strand, within ABZR87_RS03375 at 707.332 kb on + strand, within ABZR87_RS03375 at 707.333 kb on - strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.360 kb on + strand, within ABZR87_RS03375 at 707.360 kb on + strand, within ABZR87_RS03375 at 707.361 kb on - strand, within ABZR87_RS03375 at 707.361 kb on - strand, within ABZR87_RS03375 at 707.361 kb on - strand, within ABZR87_RS03375 at 707.379 kb on + strand, within ABZR87_RS03375 at 707.380 kb on - strand, within ABZR87_RS03375 at 707.394 kb on - strand, within ABZR87_RS03375 at 707.398 kb on + strand, within ABZR87_RS03375 at 707.454 kb on - strand, within ABZR87_RS03375 at 707.525 kb on + strand at 707.525 kb on + strand at 707.525 kb on + strand at 707.526 kb on - strand at 707.526 kb on - strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.592 kb on - strand at 707.592 kb on - strand at 707.592 kb on - strand at 707.592 kb on - strand at 707.592 kb on - strand at 707.592 kb on - strand at 707.599 kb on + strand at 707.600 kb on - strand at 707.655 kb on + strand, within ABZR87_RS03380 at 707.655 kb on + strand, within ABZR87_RS03380 at 707.655 kb on + strand, within ABZR87_RS03380 at 707.655 kb on + strand, within ABZR87_RS03380 at 707.655 kb on + strand, within ABZR87_RS03380 at 707.656 kb on - strand, within ABZR87_RS03380 at 707.656 kb on - strand, within ABZR87_RS03380 at 707.680 kb on + strand, within ABZR87_RS03380 at 707.680 kb on + strand, within ABZR87_RS03380 at 707.680 kb on + strand, within ABZR87_RS03380 at 707.680 kb on + strand, within ABZR87_RS03380 at 707.681 kb on - strand, within ABZR87_RS03380 at 707.681 kb on - strand, within ABZR87_RS03380 at 707.681 kb on - strand, within ABZR87_RS03380 at 707.681 kb on - strand, within ABZR87_RS03380 at 707.681 kb on - strand, within ABZR87_RS03380 at 707.681 kb on - strand, within ABZR87_RS03380 at 707.714 kb on - strand, within ABZR87_RS03380 at 707.793 kb on - strand, within ABZR87_RS03380 at 707.845 kb on + strand at 707.845 kb on + strand at 707.845 kb on + strand at 707.846 kb on - strand at 707.846 kb on - strand at 707.846 kb on - strand at 707.889 kb on + strand at 707.889 kb on + strand at 707.890 kb on - strand at 707.890 kb on - strand at 707.916 kb on + strand at 707.917 kb on - strand at 707.917 kb on - strand at 707.917 kb on - strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.953 kb on + strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 707.954 kb on - strand at 708.043 kb on + strand at 708.043 kb on + strand at 708.044 kb on - strand at 708.044 kb on - strand at 708.044 kb on - strand at 708.044 kb on - strand at 708.044 kb on - strand at 708.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 705,857 - ABZR87_RS03355 0.74 +0.6 705,963 + +0.6 705,964 - +0.6 705,964 - +0.9 705,964 - +0.4 705,964 - -1.2 705,964 - +0.4 705,964 - -0.1 706,029 + ABZR87_RS03360 0.10 +1.2 706,030 - ABZR87_RS03360 0.11 -0.2 706,030 - ABZR87_RS03360 0.11 -0.4 706,030 - ABZR87_RS03360 0.11 +0.9 706,030 - ABZR87_RS03360 0.11 +0.4 706,030 - ABZR87_RS03360 0.11 -2.3 706,101 + ABZR87_RS03360 0.27 -0.1 706,101 + ABZR87_RS03360 0.27 +0.0 706,102 - ABZR87_RS03360 0.27 +1.1 706,119 + ABZR87_RS03360 0.31 -1.3 706,120 - ABZR87_RS03360 0.31 +1.8 706,155 + ABZR87_RS03360 0.39 -1.0 706,155 + ABZR87_RS03360 0.39 +0.6 706,155 + ABZR87_RS03360 0.39 +0.3 706,155 + ABZR87_RS03360 0.39 +3.6 706,155 + ABZR87_RS03360 0.39 -0.4 706,156 - ABZR87_RS03360 0.39 +0.1 706,156 - ABZR87_RS03360 0.39 +0.3 706,246 - ABZR87_RS03360 0.60 +0.1 706,246 - ABZR87_RS03360 0.60 +0.6 706,246 - ABZR87_RS03360 0.60 -0.7 706,248 + ABZR87_RS03360 0.60 -0.5 706,248 + ABZR87_RS03360 0.60 -1.3 706,248 + ABZR87_RS03360 0.60 -0.1 706,248 + ABZR87_RS03360 0.60 -0.1 706,248 + ABZR87_RS03360 0.60 -1.0 706,248 + ABZR87_RS03360 0.60 +0.3 706,249 - ABZR87_RS03360 0.61 -0.4 706,249 - ABZR87_RS03360 0.61 -1.3 706,249 - ABZR87_RS03360 0.61 -0.7 706,249 - ABZR87_RS03360 0.61 -0.8 706,249 - ABZR87_RS03360 0.61 +0.4 706,249 - ABZR87_RS03360 0.61 +0.7 706,249 - ABZR87_RS03360 0.61 -1.9 706,249 - ABZR87_RS03360 0.61 +1.1 706,352 + ABZR87_RS03360 0.84 -1.1 706,363 + ABZR87_RS03360 0.87 -0.6 706,363 + ABZR87_RS03360 0.87 -1.0 706,364 - ABZR87_RS03360 0.87 +0.2 706,364 - ABZR87_RS03360 0.87 +0.1 706,364 - ABZR87_RS03360 0.87 +0.0 706,364 - ABZR87_RS03360 0.87 +0.2 706,419 + +1.6 706,420 - +0.3 706,420 - +0.2 706,420 - +0.8 706,420 - +0.2 706,660 - ABZR87_RS03365 0.52 -1.6 706,660 - ABZR87_RS03365 0.52 -0.8 706,693 + ABZR87_RS03365 0.60 -0.3 706,693 + ABZR87_RS03365 0.60 -0.6 706,693 + ABZR87_RS03365 0.60 -1.6 706,694 - ABZR87_RS03365 0.60 +0.2 706,694 - ABZR87_RS03365 0.60 +0.4 706,694 - ABZR87_RS03365 0.60 +0.1 706,694 - ABZR87_RS03365 0.60 -1.3 706,694 - ABZR87_RS03365 0.60 -0.6 706,741 + ABZR87_RS03365 0.72 -1.2 706,741 + ABZR87_RS03365 0.72 -0.3 706,741 + ABZR87_RS03365 0.72 -0.4 706,741 + ABZR87_RS03365 0.72 +1.1 706,741 + ABZR87_RS03365 0.72 +0.8 706,742 - ABZR87_RS03365 0.73 +0.4 706,742 - ABZR87_RS03365 0.73 +0.2 706,742 - ABZR87_RS03365 0.73 -2.1 706,742 - ABZR87_RS03365 0.73 -0.9 706,742 - ABZR87_RS03365 0.73 +1.6 706,742 - ABZR87_RS03365 0.73 +0.5 706,849 + -0.5 706,850 - -1.4 706,866 + +0.4 706,867 - -3.1 706,867 - +1.0 706,867 - +1.1 706,867 - -1.1 706,899 + ABZR87_RS03370 0.17 -0.9 706,900 - ABZR87_RS03370 0.17 -1.1 706,900 - ABZR87_RS03370 0.17 +1.0 706,900 - ABZR87_RS03370 0.17 +1.1 706,951 - ABZR87_RS03370 0.37 +0.0 706,951 - ABZR87_RS03370 0.37 +0.9 706,951 - ABZR87_RS03370 0.37 +0.9 706,964 + ABZR87_RS03370 0.42 -1.2 707,003 + ABZR87_RS03370 0.58 +0.4 707,044 + ABZR87_RS03370 0.74 +0.6 707,044 + ABZR87_RS03370 0.74 -0.0 707,045 - ABZR87_RS03370 0.74 +0.2 707,047 - ABZR87_RS03370 0.75 -0.3 707,050 + ABZR87_RS03370 0.76 +1.0 707,050 + ABZR87_RS03370 0.76 -0.0 707,051 - ABZR87_RS03370 0.76 +0.6 707,051 - ABZR87_RS03370 0.76 -0.3 707,051 - ABZR87_RS03370 0.76 -0.7 707,088 + -0.1 707,108 + -2.0 707,108 + +0.6 707,109 - -0.2 707,135 + -0.4 707,135 + +0.2 707,136 - -0.4 707,136 - -0.3 707,136 - -0.5 707,136 - -0.7 707,141 + -1.1 707,141 + +0.1 707,141 + +0.0 707,141 + -1.1 707,141 + +0.8 707,141 + +1.1 707,142 - -0.7 707,142 - +1.1 707,142 - +1.0 707,142 - +0.4 707,142 - +0.6 707,142 - -1.2 707,142 - +0.5 707,142 - +0.7 707,142 - -1.7 707,224 + ABZR87_RS03375 0.15 -0.4 707,224 + ABZR87_RS03375 0.15 -0.1 707,230 + ABZR87_RS03375 0.16 -2.0 707,230 + ABZR87_RS03375 0.16 -0.5 707,230 + ABZR87_RS03375 0.16 -0.1 707,231 - ABZR87_RS03375 0.16 -1.5 707,231 - ABZR87_RS03375 0.16 +1.4 707,231 - ABZR87_RS03375 0.16 +1.0 707,332 + ABZR87_RS03375 0.42 +2.2 707,333 - ABZR87_RS03375 0.43 +0.5 707,348 + ABZR87_RS03375 0.46 +1.1 707,348 + ABZR87_RS03375 0.46 -1.1 707,348 + ABZR87_RS03375 0.46 -1.1 707,348 + ABZR87_RS03375 0.46 -0.3 707,348 + ABZR87_RS03375 0.46 +0.6 707,349 - ABZR87_RS03375 0.47 -0.3 707,349 - ABZR87_RS03375 0.47 +1.5 707,349 - ABZR87_RS03375 0.47 +0.1 707,349 - ABZR87_RS03375 0.47 -1.1 707,360 + ABZR87_RS03375 0.49 -0.2 707,360 + ABZR87_RS03375 0.49 +0.8 707,361 - ABZR87_RS03375 0.50 +0.1 707,361 - ABZR87_RS03375 0.50 +1.1 707,361 - ABZR87_RS03375 0.50 -1.5 707,379 + ABZR87_RS03375 0.54 -0.7 707,380 - ABZR87_RS03375 0.55 +1.0 707,394 - ABZR87_RS03375 0.58 +0.9 707,398 + ABZR87_RS03375 0.59 +0.3 707,454 - ABZR87_RS03375 0.74 -0.7 707,525 + -0.2 707,525 + -0.1 707,525 + +0.6 707,526 - +0.9 707,526 - -1.0 707,591 + +0.6 707,591 + -0.6 707,591 + -1.6 707,591 + -1.6 707,591 + -0.2 707,592 - -0.7 707,592 - +1.1 707,592 - -1.9 707,592 - +0.4 707,592 - +1.6 707,592 - +0.1 707,599 + -1.2 707,600 - -1.3 707,655 + ABZR87_RS03380 0.21 -0.4 707,655 + ABZR87_RS03380 0.21 +0.6 707,655 + ABZR87_RS03380 0.21 +0.0 707,655 + ABZR87_RS03380 0.21 +1.1 707,655 + ABZR87_RS03380 0.21 +0.8 707,656 - ABZR87_RS03380 0.21 -1.3 707,656 - ABZR87_RS03380 0.21 -1.6 707,680 + ABZR87_RS03380 0.30 -0.3 707,680 + ABZR87_RS03380 0.30 -0.0 707,680 + ABZR87_RS03380 0.30 +0.3 707,680 + ABZR87_RS03380 0.30 -0.4 707,681 - ABZR87_RS03380 0.31 -1.2 707,681 - ABZR87_RS03380 0.31 +0.5 707,681 - ABZR87_RS03380 0.31 +0.2 707,681 - ABZR87_RS03380 0.31 -1.2 707,681 - ABZR87_RS03380 0.31 +0.6 707,681 - ABZR87_RS03380 0.31 +0.6 707,714 - ABZR87_RS03380 0.43 +0.9 707,793 - ABZR87_RS03380 0.72 -2.0 707,845 + +0.6 707,845 + +0.1 707,845 + +0.8 707,846 - -0.5 707,846 - -0.3 707,846 - -0.9 707,889 + +0.8 707,889 + -0.6 707,890 - -0.7 707,890 - -0.4 707,916 + -0.4 707,917 - -0.6 707,917 - -0.7 707,917 - -0.8 707,953 + +1.9 707,953 + +1.2 707,953 + +0.5 707,953 + -1.2 707,953 + +1.0 707,953 + +0.2 707,953 + +0.1 707,953 + -0.3 707,953 + +0.6 707,953 + +0.2 707,953 + +0.6 707,953 + -0.2 707,953 + -0.7 707,954 - +0.6 707,954 - +1.2 707,954 - -0.9 707,954 - +1.6 707,954 - +0.0 707,954 - -1.8 707,954 - +2.2 707,954 - -0.3 707,954 - -0.7 707,954 - -0.6 708,043 + -0.4 708,043 + +0.5 708,044 - -0.4 708,044 - -0.2 708,044 - +1.6 708,044 - +0.7 708,044 - -0.2 708,085 + +1.6
Or see this region's nucleotide sequence