Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01820 and ABZR87_RS01825 are separated by 37 nucleotides ABZR87_RS01825 and ABZR87_RS01830 are separated by 332 nucleotides ABZR87_RS01830 and ABZR87_RS01835 are separated by 26 nucleotides ABZR87_RS01835 and ABZR87_RS01840 are separated by 171 nucleotides
ABZR87_RS01820: ABZR87_RS01820 - 50S ribosomal protein L27, at 387,392 to 387,652
_RS01820
ABZR87_RS01825: ABZR87_RS01825 - 50S ribosomal protein L21, at 387,690 to 388,001
_RS01825
ABZR87_RS01830: ABZR87_RS01830 - octaprenyl diphosphate synthase, at 388,334 to 389,263
_RS01830
ABZR87_RS01835: ABZR87_RS01835 - tRNA-Pro, at 389,290 to 389,366
_RS01835
ABZR87_RS01840: ABZR87_RS01840 - HlyC/CorC family transporter, at 389,538 to 390,812
_RS01840
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.377 kb on + strand at 387.378 kb on - strand at 387.380 kb on + strand at 387.380 kb on + strand at 387.380 kb on + strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.381 kb on - strand at 387.394 kb on - strand at 388.093 kb on - strand at 388.208 kb on + strand at 388.208 kb on + strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.209 kb on - strand at 388.210 kb on + strand at 388.210 kb on + strand at 388.210 kb on + strand at 388.211 kb on - strand at 388.211 kb on - strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.455 kb on - strand at 389.455 kb on - strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.505 kb on + strand at 389.506 kb on - strand at 389.506 kb on - strand at 389.506 kb on - strand at 389.674 kb on + strand, within ABZR87_RS01840 at 389.674 kb on + strand, within ABZR87_RS01840 at 389.674 kb on + strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.024 kb on - strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 387,377 + -1.5 387,378 - -0.5 387,380 + -1.8 387,380 + +1.3 387,380 + +0.3 387,381 - -0.1 387,381 - +0.3 387,381 - +0.9 387,381 - -2.1 387,381 - -0.1 387,381 - +0.5 387,394 - -1.8 388,093 - +0.1 388,208 + +0.2 388,208 + +0.2 388,209 - -0.2 388,209 - +2.7 388,209 - -0.2 388,209 - +0.4 388,209 - +0.8 388,209 - +0.7 388,209 - +0.5 388,209 - +0.5 388,210 + +0.5 388,210 + +0.0 388,210 + +0.0 388,211 - +1.7 388,211 - +0.3 389,454 + +0.5 389,454 + +0.6 389,454 + -0.5 389,454 + +1.5 389,455 - -1.1 389,455 - -2.0 389,503 + -1.3 389,503 + +0.4 389,503 + +0.2 389,503 + -0.3 389,503 + -2.1 389,503 + -1.5 389,503 + -2.8 389,503 + -0.7 389,503 + -2.0 389,503 + +1.6 389,504 - -0.0 389,504 - +0.6 389,504 - +0.4 389,504 - +0.1 389,504 - -0.2 389,504 - +0.9 389,505 + +0.6 389,506 - -0.3 389,506 - -0.1 389,506 - +0.8 389,674 + ABZR87_RS01840 0.11 +0.9 389,674 + ABZR87_RS01840 0.11 +0.4 389,674 + ABZR87_RS01840 0.11 +0.7 389,675 - ABZR87_RS01840 0.11 -0.8 389,675 - ABZR87_RS01840 0.11 +0.2 389,675 - ABZR87_RS01840 0.11 -2.0 389,675 - ABZR87_RS01840 0.11 -0.8 389,690 + ABZR87_RS01840 0.12 +0.5 389,690 + ABZR87_RS01840 0.12 -0.4 389,690 + ABZR87_RS01840 0.12 +0.2 389,690 + ABZR87_RS01840 0.12 -1.4 389,690 + ABZR87_RS01840 0.12 +1.1 389,691 - ABZR87_RS01840 0.12 -1.3 389,691 - ABZR87_RS01840 0.12 -0.1 389,691 - ABZR87_RS01840 0.12 -0.0 389,691 - ABZR87_RS01840 0.12 +0.1 389,691 - ABZR87_RS01840 0.12 -0.4 389,800 - ABZR87_RS01840 0.21 +1.0 389,800 - ABZR87_RS01840 0.21 -1.1 389,800 - ABZR87_RS01840 0.21 -0.4 389,855 - ABZR87_RS01840 0.25 -0.1 389,855 - ABZR87_RS01840 0.25 -1.0 389,855 - ABZR87_RS01840 0.25 +0.1 390,023 + ABZR87_RS01840 0.38 +1.1 390,023 + ABZR87_RS01840 0.38 +0.3 390,023 + ABZR87_RS01840 0.38 +0.8 390,023 + ABZR87_RS01840 0.38 -1.1 390,024 - ABZR87_RS01840 0.38 +1.2 390,243 + ABZR87_RS01840 0.55 -1.7 390,243 + ABZR87_RS01840 0.55 +0.9 390,243 + ABZR87_RS01840 0.55 +1.2 390,243 + ABZR87_RS01840 0.55 +0.3 390,244 - ABZR87_RS01840 0.55 -2.0 390,244 - ABZR87_RS01840 0.55 +0.5 390,244 - ABZR87_RS01840 0.55 -0.3 390,244 - ABZR87_RS01840 0.55 -0.5
Or see this region's nucleotide sequence