Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003510

Experiment: R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM
3,934,379	+		ABIE53_003508	0.74	-1.2
3,934,379	+		ABIE53_003508	0.74	+1.2
3,934,379	+		ABIE53_003508	0.74	-0.7
3,934,380	-		ABIE53_003508	0.74	-0.0
3,934,380	-		ABIE53_003508	0.74	-0.3
3,934,380	-		ABIE53_003508	0.74	-0.1
3,934,380	-		ABIE53_003508	0.74	+1.0
3,934,380	-		ABIE53_003508	0.74	-0.9
3,934,380	-		ABIE53_003508	0.74	+2.3
3,934,380	-		ABIE53_003508	0.74	-0.2
3,934,380	-		ABIE53_003508	0.74	+2.0
3,934,380	-		ABIE53_003508	0.74	+0.6
3,934,380	-		ABIE53_003508	0.74	-2.2
3,934,512	+				+2.0
3,934,512	+				+0.2
3,934,512	+				+2.0
3,934,512	+				+1.0
3,934,512	+				+2.6
3,934,512	+				-2.1
3,934,513	-				+0.3
3,934,513	-				-0.4
3,934,513	-				-0.2
3,934,513	-				-0.0
3,934,513	-				-0.0
3,934,513	-				+0.2
3,934,513	-				-1.1
3,934,531	-				-0.4
3,934,531	-				+0.4
3,934,568	+				+1.0
3,934,570	+				+1.0
3,934,570	+				-0.6
3,934,570	+				+0.3
3,934,571	-				-1.0
3,934,571	-				-0.6
3,934,571	-				+1.0
3,934,639	+		ABIE53_003509	0.11	-1.0
3,934,639	+		ABIE53_003509	0.11	+0.4
3,934,639	+		ABIE53_003509	0.11	-1.0
3,934,639	+		ABIE53_003509	0.11	-0.6
3,934,639	+		ABIE53_003509	0.11	-0.3
3,934,639	+		ABIE53_003509	0.11	+1.0
3,934,640	-		ABIE53_003509	0.12	-1.0
3,934,640	-		ABIE53_003509	0.12	+0.4
3,934,669	+		ABIE53_003509	0.16	-0.0
3,934,669	+		ABIE53_003509	0.16	-1.3
3,934,669	+		ABIE53_003509	0.16	-0.6
3,934,669	+		ABIE53_003509	0.16	+1.5
3,934,669	+		ABIE53_003509	0.16	-0.6
3,934,669	+		ABIE53_003509	0.16	-1.2
3,934,669	+		ABIE53_003509	0.16	-0.2
3,934,669	+		ABIE53_003509	0.16	-1.0
3,934,669	+		ABIE53_003509	0.16	+1.0
3,934,669	+		ABIE53_003509	0.16	+1.0
3,934,669	+		ABIE53_003509	0.16	+1.7
3,934,669	+		ABIE53_003509	0.16	-0.3
3,934,669	+		ABIE53_003509	0.16	+2.0
3,934,669	+		ABIE53_003509	0.16	-1.6
3,934,669	+		ABIE53_003509	0.16	+0.1
3,934,669	+		ABIE53_003509	0.16	-1.6
3,934,669	+		ABIE53_003509	0.16	-1.9
3,934,669	+		ABIE53_003509	0.16	+0.8
3,934,669	+		ABIE53_003509	0.16	-1.3
3,934,669	+		ABIE53_003509	0.16	+0.2
3,934,669	+		ABIE53_003509	0.16	+0.4
3,934,669	+		ABIE53_003509	0.16	-1.6
3,934,669	+		ABIE53_003509	0.16	-1.0
3,934,669	+		ABIE53_003509	0.16	-0.3
3,934,669	+		ABIE53_003509	0.16	-0.8
3,934,670	-		ABIE53_003509	0.16	-0.6
3,934,670	-		ABIE53_003509	0.16	+0.4
3,934,670	-		ABIE53_003509	0.16	-0.0
3,934,670	-		ABIE53_003509	0.16	-1.6
3,934,670	-		ABIE53_003509	0.16	-1.8
3,934,670	-		ABIE53_003509	0.16	-0.2
3,934,670	-		ABIE53_003509	0.16	+2.3
3,934,670	-		ABIE53_003509	0.16	-0.6
3,934,670	-		ABIE53_003509	0.16	+0.0
3,934,670	-		ABIE53_003509	0.16	+0.4
3,934,670	-		ABIE53_003509	0.16	+0.4
3,934,670	-		ABIE53_003509	0.16	+0.3
3,934,684	+		ABIE53_003509	0.18	-2.8
3,934,684	+		ABIE53_003509	0.18	-1.4
3,934,684	+		ABIE53_003509	0.18	+0.4
3,934,684	+		ABIE53_003509	0.18	-1.2
3,934,685	-		ABIE53_003509	0.18	-1.4
3,934,685	-		ABIE53_003509	0.18	-0.6
3,934,685	-		ABIE53_003509	0.18	-0.6
3,934,685	-		ABIE53_003509	0.18	+0.6
3,934,685	-		ABIE53_003509	0.18	+0.2
3,934,760	+		ABIE53_003509	0.28	-0.3
3,934,760	+		ABIE53_003509	0.28	-0.3
3,934,761	-		ABIE53_003509	0.28	-1.3
3,934,761	-		ABIE53_003509	0.28	+2.6
3,934,761	-		ABIE53_003509	0.28	+0.3
3,934,822	+		ABIE53_003509	0.36	-0.3
3,934,822	+		ABIE53_003509	0.36	+0.1
3,934,822	+		ABIE53_003509	0.36	-0.0
3,934,822	+		ABIE53_003509	0.36	+0.3
3,934,822	+		ABIE53_003509	0.36	-0.2
3,934,823	-		ABIE53_003509	0.36	-1.0
3,934,823	-		ABIE53_003509	0.36	-0.7
3,934,828	+		ABIE53_003509	0.37	-0.0
3,934,828	+		ABIE53_003509	0.37	-2.0
3,934,828	+		ABIE53_003509	0.37	-1.0
3,934,829	-		ABIE53_003509	0.37	+0.4
3,934,829	-		ABIE53_003509	0.37	+1.0
3,935,028	+		ABIE53_003509	0.64	-1.0
3,935,038	+		ABIE53_003509	0.65	-0.7
3,935,038	+		ABIE53_003509	0.65	-1.4
3,935,038	+		ABIE53_003509	0.65	-1.0
3,935,038	+		ABIE53_003509	0.65	-0.8
3,935,039	-		ABIE53_003509	0.65	-1.8
3,935,069	+		ABIE53_003509	0.70	+0.7
3,935,070	-		ABIE53_003509	0.70	-2.9
3,935,089	+		ABIE53_003509	0.72	+0.3
3,935,089	+		ABIE53_003509	0.72	+3.3
3,935,089	+		ABIE53_003509	0.72	+0.1
3,935,089	+		ABIE53_003509	0.72	+2.4
3,935,089	+		ABIE53_003509	0.72	-0.2
3,935,089	+		ABIE53_003509	0.72	+0.2
3,935,090	-		ABIE53_003509	0.72	-0.9
3,935,090	-		ABIE53_003509	0.72	+2.6
3,935,090	-		ABIE53_003509	0.72	-1.0
3,935,090	-		ABIE53_003509	0.72	-3.3
3,935,090	-		ABIE53_003509	0.72	-1.4
3,935,090	-		ABIE53_003509	0.72	+0.6
3,935,090	-		ABIE53_003509	0.72	-1.8
3,935,090	-		ABIE53_003509	0.72	-0.0
3,935,090	-		ABIE53_003509	0.72	+2.0
3,935,192	+		ABIE53_003509	0.86	-0.4
3,935,193	-		ABIE53_003509	0.86	-0.1
3,935,230	+				-0.4
3,935,230	+				-1.9
3,935,230	+				-0.2
3,935,230	+				+0.5
3,935,230	+				-0.6
3,935,230	+				-0.8
3,935,231	-				+1.0
3,935,231	-				-0.0
3,935,231	-				-2.1
3,935,231	-				-0.8
3,935,231	-				+0.4
3,935,231	-				-1.1
3,935,231	-				+0.4
3,935,231	-				-1.6
3,935,231	-				-0.3
3,935,231	-				+1.6
3,935,287	+				-0.0
3,935,287	+				-0.0
3,935,287	+				+1.0
3,935,287	+				-0.0
3,935,287	+				+2.6
3,935,287	+				-1.0
3,935,287	+				-0.0
3,935,287	+				-0.4
3,935,288	-				+1.0
3,935,288	-				+1.0
3,935,288	-				-0.0
3,935,288	-				+1.0
3,935,288	-				+1.0
3,935,289	+				-1.0
3,935,371	+				+1.0
3,935,371	+				+0.4
3,935,371	+				+2.6
3,935,371	+				+2.6
3,935,371	+				+0.1
3,935,372	-				+1.6
3,935,372	-				+1.0
3,935,372	-				-0.7
3,935,372	-				-0.9
3,935,372	-				-0.6
3,935,378	+				-1.0
3,935,379	-				+0.6
3,935,379	-				-0.7
3,935,408	+				-1.0
3,935,409	-				-0.4
3,935,409	-				+0.5
3,935,409	-				+2.3
3,935,489	+		ABIE53_003510	0.13	-0.3
3,935,489	+		ABIE53_003510	0.13	-1.0
3,935,489	+		ABIE53_003510	0.13	-0.0
3,935,490	-		ABIE53_003510	0.13	+1.6
3,935,585	+		ABIE53_003510	0.23	-1.3
3,935,585	+		ABIE53_003510	0.23	-0.0
3,935,585	+		ABIE53_003510	0.23	+1.0
3,935,585	+		ABIE53_003510	0.23	+1.6
3,935,585	+		ABIE53_003510	0.23	-1.0
3,935,586	-		ABIE53_003510	0.23	-1.3
3,935,586	-		ABIE53_003510	0.23	+0.3
3,935,586	-		ABIE53_003510	0.23	-0.0
3,935,634	+		ABIE53_003510	0.29	+2.0
3,935,635	-		ABIE53_003510	0.29	-0.5
3,935,938	-		ABIE53_003510	0.63	-0.9
3,935,992	-		ABIE53_003510	0.69	+1.3
3,935,992	-		ABIE53_003510	0.69	-0.6
3,936,092	+		ABIE53_003510	0.80	-0.7
3,936,119	+		ABIE53_003510	0.83	-1.2
3,936,119	+		ABIE53_003510	0.83	-0.5
3,936,119	+		ABIE53_003510	0.83	-0.3
3,936,119	+		ABIE53_003510	0.83	-1.6
3,936,119	+		ABIE53_003510	0.83	-1.7
3,936,119	+		ABIE53_003510	0.83	-0.7
3,936,119	+		ABIE53_003510	0.83	-1.0
3,936,119	+		ABIE53_003510	0.83	-3.9
3,936,120	-		ABIE53_003510	0.83	+1.0
3,936,120	-		ABIE53_003510	0.83	-2.2
3,936,120	-		ABIE53_003510	0.83	-0.5
3,936,120	-		ABIE53_003510	0.83	+0.7
3,936,120	-		ABIE53_003510	0.83	+3.0
3,936,120	-		ABIE53_003510	0.83	-2.0
3,936,120	-		ABIE53_003510	0.83	+1.0
3,936,120	-		ABIE53_003510	0.83	+2.6
3,936,120	-		ABIE53_003510	0.83	-1.3
3,936,120	-		ABIE53_003510	0.83	-0.1
3,936,120	-		ABIE53_003510	0.83	+0.3
3,936,122	+		ABIE53_003510	0.83	-0.8
3,936,122	+		ABIE53_003510	0.83	-0.3
3,936,122	+		ABIE53_003510	0.83	+0.3
3,936,122	+		ABIE53_003510	0.83	+0.4
3,936,123	-		ABIE53_003510	0.83	+2.6
3,936,123	-		ABIE53_003510	0.83	-1.0
3,936,123	-		ABIE53_003510	0.83	+1.7
3,936,262	-				-0.0
3,936,262	-				+2.0
3,936,304	+				+0.4
3,936,312	+				+0.6
3,936,312	+				-1.1
3,936,312	+				-0.0
3,936,312	+				-1.3
3,936,312	+				-0.2
3,936,312	+				+2.0
3,936,312	+				+1.0
3,936,313	-				-1.1
3,936,313	-				-1.4
3,936,313	-				-0.0
3,936,313	-				+1.4
3,936,313	-				-2.3
3,936,313	-				+2.3
3,936,316	+				-0.1
3,936,316	+				-1.2
3,936,316	+				+1.0
3,936,316	+				-1.5
3,936,317	-				-0.0
3,936,317	-				+0.7
3,936,317	-				-2.3
3,936,327	+				+1.0
3,936,327	+				-0.6
3,936,327	+				-2.0
3,936,327	+				-0.2
3,936,327	+				+0.4
3,936,327	+				-0.3
3,936,328	-				-1.3
3,936,328	-				+1.3
3,936,328	-				+0.3
3,936,328	-				+1.3
3,936,328	-				+1.4
3,936,328	-				-1.2
3,936,328	-				-0.7
3,936,328	-				+0.4
3,936,328	-				-1.8
3,936,333	+				+0.6
3,936,333	+				-1.3
3,936,333	+				-0.5
3,936,333	+				-0.8
3,936,333	+				+0.1
3,936,333	+				-0.2
3,936,333	+				-0.4
3,936,333	+				+0.1
3,936,333	+				-0.2
3,936,333	+				-0.1
3,936,334	-				+1.0
3,936,334	-				+0.3
3,936,334	-				-0.2
3,936,334	-				-0.0
3,936,335	+				-0.1
3,936,335	+				-0.0
3,936,335	+				-0.1
3,936,335	+				-0.1
3,936,335	+				-0.1
3,936,336	-				-0.6
3,936,336	-				-0.9
3,936,336	-				-0.3
3,936,336	-				-1.0
3,936,364	-				-0.5
3,936,364	-				-0.7
3,936,364	-				+0.2
3,936,449	+				-2.2
3,936,450	-				-0.1
3,936,491	+				+1.6
3,936,491	+				-0.6
3,936,491	+				-0.2
3,936,491	+				-0.0
3,936,492	-				+0.3
3,936,520	+				-0.6
3,936,520	+				+1.0
3,936,521	-				-0.0
3,936,541	+				+3.3
3,936,541	+				+1.0
3,936,541	+				-0.4
3,936,542	-				-0.2
3,936,542	-				-0.1
3,936,542	-				+1.3
3,936,542	-				+0.1
3,936,756	+		ABIE53_003511	0.15	-2.3
3,936,907	+		ABIE53_003511	0.27	-0.0
3,937,063	-		ABIE53_003511	0.38	-2.8
3,937,166	-		ABIE53_003511	0.46	-0.0