Experiment: MoLS4 with L-Leucine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0170 and patB are separated by 228 nucleotides patB and phsB are separated by 577 nucleotides
DVU0170: DVU0170 - methyl-accepting chemotaxis protein (TIGR), at 211,427 to 213,496
DVU0170
DVU0171: patB - hemolysin-related protein (TIGR), at 213,725 to 214,906
patB
DVU0172: phsB - thiosulfate reductase (phsB) (Shelley Haveman), at 215,484 to 216,485
phsB
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 212.729 kb on + strand, within DVU0170 at 212.730 kb on - strand, within DVU0170 at 212.971 kb on + strand, within DVU0170 at 212.973 kb on + strand, within DVU0170 at 212.979 kb on - strand, within DVU0170 at 212.981 kb on - strand, within DVU0170 at 212.983 kb on + strand, within DVU0170 at 213.011 kb on - strand, within DVU0170 at 213.037 kb on + strand, within DVU0170 at 213.045 kb on - strand, within DVU0170 at 213.050 kb on + strand, within DVU0170 at 213.051 kb on - strand, within DVU0170 at 213.058 kb on - strand, within DVU0170 at 213.058 kb on - strand, within DVU0170 at 213.064 kb on - strand, within DVU0170 at 213.089 kb on - strand, within DVU0170 at 213.107 kb on + strand, within DVU0170 at 213.204 kb on + strand, within DVU0170 at 213.204 kb on + strand, within DVU0170 at 213.204 kb on + strand, within DVU0170 at 213.204 kb on + strand, within DVU0170 at 213.204 kb on + strand, within DVU0170 at 213.212 kb on - strand, within DVU0170 at 213.254 kb on - strand, within DVU0170 at 213.254 kb on - strand, within DVU0170 at 213.254 kb on - strand, within DVU0170 at 213.287 kb on + strand, within DVU0170 at 213.297 kb on + strand at 213.316 kb on + strand at 213.333 kb on - strand at 213.363 kb on - strand at 213.373 kb on - strand at 213.508 kb on + strand at 213.508 kb on - strand at 213.514 kb on - strand at 213.516 kb on - strand at 213.555 kb on - strand at 213.577 kb on - strand at 213.605 kb on + strand at 213.623 kb on - strand at 213.654 kb on - strand at 213.715 kb on - strand at 213.735 kb on + strand at 213.774 kb on - strand at 213.795 kb on - strand at 213.805 kb on - strand at 213.893 kb on - strand, within patB at 213.919 kb on + strand, within patB at 213.949 kb on + strand, within patB at 214.002 kb on + strand, within patB at 214.126 kb on + strand, within patB at 214.163 kb on - strand, within patB at 214.168 kb on - strand, within patB at 214.195 kb on + strand, within patB at 214.238 kb on + strand, within patB at 214.275 kb on - strand, within patB at 214.379 kb on - strand, within patB at 214.410 kb on + strand, within patB at 214.413 kb on + strand, within patB at 214.446 kb on - strand, within patB at 214.447 kb on - strand, within patB at 214.508 kb on - strand, within patB at 214.519 kb on + strand, within patB at 214.527 kb on - strand, within patB at 214.570 kb on - strand, within patB at 214.604 kb on + strand, within patB at 214.612 kb on - strand, within patB at 214.742 kb on + strand, within patB at 214.820 kb on + strand at 214.949 kb on + strand at 215.026 kb on + strand at 215.175 kb on - strand at 215.188 kb on + strand at 215.200 kb on + strand at 215.401 kb on + strand at 215.401 kb on + strand at 215.444 kb on + strand at 215.447 kb on + strand at 215.459 kb on + strand at 215.467 kb on - strand at 215.482 kb on + strand at 215.518 kb on - strand at 215.555 kb on + strand at 215.563 kb on - strand at 215.578 kb on + strand at 215.586 kb on - strand, within phsB at 215.627 kb on + strand, within phsB at 215.635 kb on - strand, within phsB at 215.674 kb on + strand, within phsB at 215.676 kb on + strand, within phsB at 215.747 kb on + strand, within phsB at 215.815 kb on - strand, within phsB at 215.822 kb on - strand, within phsB at 215.841 kb on - strand, within phsB at 215.879 kb on + strand, within phsB at 215.884 kb on - strand, within phsB at 215.887 kb on - strand, within phsB
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM remove 212,729 + DVU0170 0.63 -1.4 212,730 - DVU0170 0.63 -0.3 212,971 + DVU0170 0.75 -0.3 212,973 + DVU0170 0.75 -2.1 212,979 - DVU0170 0.75 -1.9 212,981 - DVU0170 0.75 +0.2 212,983 + DVU0170 0.75 -1.5 213,011 - DVU0170 0.77 -0.0 213,037 + DVU0170 0.78 -0.4 213,045 - DVU0170 0.78 -0.1 213,050 + DVU0170 0.78 +0.2 213,051 - DVU0170 0.78 +0.2 213,058 - DVU0170 0.79 -0.1 213,058 - DVU0170 0.79 -0.4 213,064 - DVU0170 0.79 -1.5 213,089 - DVU0170 0.80 -0.1 213,107 + DVU0170 0.81 -0.0 213,204 + DVU0170 0.86 +0.5 213,204 + DVU0170 0.86 -0.3 213,204 + DVU0170 0.86 +1.0 213,204 + DVU0170 0.86 +1.1 213,204 + DVU0170 0.86 +0.2 213,212 - DVU0170 0.86 +1.1 213,254 - DVU0170 0.88 +0.4 213,254 - DVU0170 0.88 -0.0 213,254 - DVU0170 0.88 -1.7 213,287 + DVU0170 0.90 -0.8 213,297 + +0.4 213,316 + +0.1 213,333 - -1.4 213,363 - +0.0 213,373 - -0.7 213,508 + -0.9 213,508 - -0.4 213,514 - -2.2 213,516 - -0.4 213,555 - -0.1 213,577 - -0.6 213,605 + +0.1 213,623 - -1.9 213,654 - -0.2 213,715 - +0.2 213,735 + +0.1 213,774 - +1.0 213,795 - +0.7 213,805 - -0.7 213,893 - patB DVU0171 0.14 -1.2 213,919 + patB DVU0171 0.16 +0.2 213,949 + patB DVU0171 0.19 -0.0 214,002 + patB DVU0171 0.23 -2.1 214,126 + patB DVU0171 0.34 -0.1 214,163 - patB DVU0171 0.37 +1.2 214,168 - patB DVU0171 0.37 +0.6 214,195 + patB DVU0171 0.40 -0.8 214,238 + patB DVU0171 0.43 -1.8 214,275 - patB DVU0171 0.47 -0.7 214,379 - patB DVU0171 0.55 +1.1 214,410 + patB DVU0171 0.58 -0.5 214,413 + patB DVU0171 0.58 +0.0 214,446 - patB DVU0171 0.61 +2.8 214,447 - patB DVU0171 0.61 -0.9 214,508 - patB DVU0171 0.66 -0.2 214,519 + patB DVU0171 0.67 +0.1 214,527 - patB DVU0171 0.68 +0.4 214,570 - patB DVU0171 0.71 +0.6 214,604 + patB DVU0171 0.74 -1.7 214,612 - patB DVU0171 0.75 +0.6 214,742 + patB DVU0171 0.86 +0.3 214,820 + +0.4 214,949 + +0.5 215,026 + +0.1 215,175 - -0.2 215,188 + -0.2 215,200 + -0.9 215,401 + +1.1 215,401 + -2.5 215,444 + +0.7 215,447 + -0.3 215,459 + +0.0 215,467 - +0.8 215,482 + -0.0 215,518 - +0.1 215,555 + -1.1 215,563 - -1.6 215,578 + +0.2 215,586 - phsB DVU0172 0.10 +0.1 215,627 + phsB DVU0172 0.14 -0.6 215,635 - phsB DVU0172 0.15 +0.1 215,674 + phsB DVU0172 0.19 -0.1 215,676 + phsB DVU0172 0.19 +1.1 215,747 + phsB DVU0172 0.26 -2.2 215,815 - phsB DVU0172 0.33 -0.1 215,822 - phsB DVU0172 0.34 -1.9 215,841 - phsB DVU0172 0.36 -1.4 215,879 + phsB DVU0172 0.39 -0.2 215,884 - phsB DVU0172 0.40 -0.6 215,887 - phsB DVU0172 0.40 -1.0
Or see this region's nucleotide sequence