Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2482

Experiment: MoLS4 with L-Leucine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdoH and fdnG-2 are separated by 110 nucleotidesfdnG-2 and DVU2483 are separated by 16 nucleotides DVU2481: fdoH - formate dehydrogenase, beta subunit, putative (TIGR), at 2,589,171 to 2,589,953 fdoH DVU2482: fdnG-2 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 2,590,064 to 2,593,075 fdnG-2 DVU2483: DVU2483 - cytochrome c family protein (TIGR), at 2,593,092 to 2,594,837 DVU2483 Position (kb) 2590 2591 2592 2593 2594Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2589.066 kb on + strandat 2589.139 kb on - strandat 2589.150 kb on - strandat 2589.282 kb on - strand, within fdoHat 2589.412 kb on + strand, within fdoHat 2589.546 kb on + strand, within fdoHat 2589.576 kb on - strand, within fdoHat 2589.634 kb on + strand, within fdoHat 2589.647 kb on + strand, within fdoHat 2589.712 kb on - strand, within fdoHat 2589.728 kb on + strand, within fdoHat 2589.736 kb on - strand, within fdoHat 2589.770 kb on + strand, within fdoHat 2589.820 kb on - strand, within fdoHat 2589.897 kb on + strandat 2589.900 kb on - strandat 2590.003 kb on - strandat 2590.061 kb on + strandat 2590.068 kb on + strandat 2590.068 kb on + strandat 2590.069 kb on - strandat 2590.069 kb on - strandat 2590.069 kb on - strandat 2590.076 kb on - strandat 2590.097 kb on + strandat 2590.134 kb on + strandat 2590.235 kb on - strandat 2590.382 kb on - strand, within fdnG-2at 2590.453 kb on - strand, within fdnG-2at 2590.488 kb on + strand, within fdnG-2at 2590.521 kb on + strand, within fdnG-2at 2590.760 kb on + strand, within fdnG-2at 2590.768 kb on - strand, within fdnG-2at 2590.768 kb on - strand, within fdnG-2at 2590.768 kb on - strand, within fdnG-2at 2590.813 kb on + strand, within fdnG-2at 2590.813 kb on + strand, within fdnG-2at 2590.821 kb on - strand, within fdnG-2at 2590.821 kb on - strand, within fdnG-2at 2590.847 kb on + strand, within fdnG-2at 2590.878 kb on + strand, within fdnG-2at 2590.960 kb on - strand, within fdnG-2at 2591.137 kb on + strand, within fdnG-2at 2591.173 kb on - strand, within fdnG-2at 2591.259 kb on + strand, within fdnG-2at 2591.277 kb on + strand, within fdnG-2at 2591.285 kb on - strand, within fdnG-2at 2591.285 kb on - strand, within fdnG-2at 2591.294 kb on + strand, within fdnG-2at 2591.302 kb on - strand, within fdnG-2at 2591.306 kb on - strand, within fdnG-2at 2591.310 kb on + strand, within fdnG-2at 2591.350 kb on + strand, within fdnG-2at 2591.358 kb on - strand, within fdnG-2at 2591.369 kb on + strand, within fdnG-2at 2591.384 kb on - strand, within fdnG-2at 2591.403 kb on - strand, within fdnG-2at 2591.439 kb on + strand, within fdnG-2at 2591.447 kb on - strand, within fdnG-2at 2591.447 kb on - strand, within fdnG-2at 2591.511 kb on + strand, within fdnG-2at 2591.513 kb on - strand, within fdnG-2at 2591.594 kb on + strand, within fdnG-2at 2591.637 kb on + strand, within fdnG-2at 2591.656 kb on + strand, within fdnG-2at 2591.860 kb on + strand, within fdnG-2at 2591.868 kb on - strand, within fdnG-2at 2591.916 kb on + strand, within fdnG-2at 2591.916 kb on + strand, within fdnG-2at 2591.924 kb on - strand, within fdnG-2at 2591.924 kb on - strand, within fdnG-2at 2592.051 kb on + strand, within fdnG-2at 2592.272 kb on - strand, within fdnG-2at 2592.272 kb on - strand, within fdnG-2at 2592.334 kb on - strand, within fdnG-2at 2592.341 kb on + strand, within fdnG-2at 2592.391 kb on - strand, within fdnG-2at 2592.498 kb on - strand, within fdnG-2at 2592.533 kb on - strand, within fdnG-2at 2592.564 kb on + strand, within fdnG-2at 2592.607 kb on - strand, within fdnG-2at 2592.675 kb on + strand, within fdnG-2at 2592.752 kb on + strand, within fdnG-2at 2592.752 kb on + strand, within fdnG-2at 2592.760 kb on - strand, within fdnG-2at 2592.760 kb on - strand, within fdnG-2at 2592.760 kb on - strand, within fdnG-2at 2592.760 kb on - strand, within fdnG-2at 2592.760 kb on - strand, within fdnG-2at 2592.771 kb on + strand, within fdnG-2at 2592.807 kb on + strandat 2592.815 kb on - strandat 2592.852 kb on + strandat 2592.876 kb on + strandat 2592.887 kb on + strandat 2592.942 kb on + strandat 2592.943 kb on - strandat 2592.995 kb on + strandat 2593.144 kb on + strandat 2593.163 kb on + strandat 2593.163 kb on + strandat 2593.171 kb on - strandat 2593.228 kb on - strandat 2593.365 kb on - strand, within DVU2483at 2593.422 kb on - strand, within DVU2483at 2593.470 kb on + strand, within DVU2483at 2593.653 kb on - strand, within DVU2483at 2593.794 kb on + strand, within DVU2483at 2593.847 kb on - strand, within DVU2483at 2593.867 kb on + strand, within DVU2483at 2593.885 kb on - strand, within DVU2483at 2593.890 kb on - strand, within DVU2483at 2593.902 kb on + strand, within DVU2483at 2593.910 kb on - strand, within DVU2483at 2593.917 kb on - strand, within DVU2483at 2594.025 kb on - strand, within DVU2483

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
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2,589,066 + -0.0
2,589,139 - +0.5
2,589,150 - -1.5
2,589,282 - fdoH DVU2481 0.14 -0.6
2,589,412 + fdoH DVU2481 0.31 +1.0
2,589,546 + fdoH DVU2481 0.48 -0.1
2,589,576 - fdoH DVU2481 0.52 -1.8
2,589,634 + fdoH DVU2481 0.59 +2.3
2,589,647 + fdoH DVU2481 0.61 +0.1
2,589,712 - fdoH DVU2481 0.69 -0.1
2,589,728 + fdoH DVU2481 0.71 +0.2
2,589,736 - fdoH DVU2481 0.72 +0.1
2,589,770 + fdoH DVU2481 0.77 +1.9
2,589,820 - fdoH DVU2481 0.83 -0.1
2,589,897 + -1.2
2,589,900 - +0.2
2,590,003 - +1.3
2,590,061 + -0.4
2,590,068 + -1.3
2,590,068 + -1.6
2,590,069 - +0.5
2,590,069 - -0.5
2,590,069 - +0.3
2,590,076 - -1.6
2,590,097 + +0.7
2,590,134 + +0.3
2,590,235 - -0.4
2,590,382 - fdnG-2 DVU2482 0.11 -1.0
2,590,453 - fdnG-2 DVU2482 0.13 -0.9
2,590,488 + fdnG-2 DVU2482 0.14 +0.0
2,590,521 + fdnG-2 DVU2482 0.15 -0.5
2,590,760 + fdnG-2 DVU2482 0.23 -0.4
2,590,768 - fdnG-2 DVU2482 0.23 +0.3
2,590,768 - fdnG-2 DVU2482 0.23 -0.2
2,590,768 - fdnG-2 DVU2482 0.23 -0.3
2,590,813 + fdnG-2 DVU2482 0.25 -0.3
2,590,813 + fdnG-2 DVU2482 0.25 -0.4
2,590,821 - fdnG-2 DVU2482 0.25 -0.2
2,590,821 - fdnG-2 DVU2482 0.25 -2.4
2,590,847 + fdnG-2 DVU2482 0.26 -1.0
2,590,878 + fdnG-2 DVU2482 0.27 -1.0
2,590,960 - fdnG-2 DVU2482 0.30 -1.1
2,591,137 + fdnG-2 DVU2482 0.36 -0.3
2,591,173 - fdnG-2 DVU2482 0.37 -0.8
2,591,259 + fdnG-2 DVU2482 0.40 -2.1
2,591,277 + fdnG-2 DVU2482 0.40 -0.4
2,591,285 - fdnG-2 DVU2482 0.41 -1.0
2,591,285 - fdnG-2 DVU2482 0.41 +0.3
2,591,294 + fdnG-2 DVU2482 0.41 +0.3
2,591,302 - fdnG-2 DVU2482 0.41 -1.2
2,591,306 - fdnG-2 DVU2482 0.41 +0.3
2,591,310 + fdnG-2 DVU2482 0.41 -0.6
2,591,350 + fdnG-2 DVU2482 0.43 +0.9
2,591,358 - fdnG-2 DVU2482 0.43 -0.5
2,591,369 + fdnG-2 DVU2482 0.43 -0.0
2,591,384 - fdnG-2 DVU2482 0.44 -2.0
2,591,403 - fdnG-2 DVU2482 0.44 +0.4
2,591,439 + fdnG-2 DVU2482 0.46 -0.6
2,591,447 - fdnG-2 DVU2482 0.46 -0.2
2,591,447 - fdnG-2 DVU2482 0.46 -0.1
2,591,511 + fdnG-2 DVU2482 0.48 -0.9
2,591,513 - fdnG-2 DVU2482 0.48 -1.2
2,591,594 + fdnG-2 DVU2482 0.51 +1.7
2,591,637 + fdnG-2 DVU2482 0.52 -0.7
2,591,656 + fdnG-2 DVU2482 0.53 -2.0
2,591,860 + fdnG-2 DVU2482 0.60 +0.1
2,591,868 - fdnG-2 DVU2482 0.60 -0.1
2,591,916 + fdnG-2 DVU2482 0.61 +0.9
2,591,916 + fdnG-2 DVU2482 0.61 -1.8
2,591,924 - fdnG-2 DVU2482 0.62 -1.5
2,591,924 - fdnG-2 DVU2482 0.62 +0.3
2,592,051 + fdnG-2 DVU2482 0.66 -0.3
2,592,272 - fdnG-2 DVU2482 0.73 -0.9
2,592,272 - fdnG-2 DVU2482 0.73 -1.3
2,592,334 - fdnG-2 DVU2482 0.75 -1.7
2,592,341 + fdnG-2 DVU2482 0.76 +0.6
2,592,391 - fdnG-2 DVU2482 0.77 +0.3
2,592,498 - fdnG-2 DVU2482 0.81 +0.0
2,592,533 - fdnG-2 DVU2482 0.82 -1.0
2,592,564 + fdnG-2 DVU2482 0.83 +0.2
2,592,607 - fdnG-2 DVU2482 0.84 +0.0
2,592,675 + fdnG-2 DVU2482 0.87 -1.3
2,592,752 + fdnG-2 DVU2482 0.89 -0.5
2,592,752 + fdnG-2 DVU2482 0.89 +0.2
2,592,760 - fdnG-2 DVU2482 0.90 -1.4
2,592,760 - fdnG-2 DVU2482 0.90 +0.2
2,592,760 - fdnG-2 DVU2482 0.90 -2.0
2,592,760 - fdnG-2 DVU2482 0.90 -0.5
2,592,760 - fdnG-2 DVU2482 0.90 +0.8
2,592,771 + fdnG-2 DVU2482 0.90 +0.1
2,592,807 + +0.3
2,592,815 - -1.4
2,592,852 + -0.5
2,592,876 + -0.2
2,592,887 + -1.4
2,592,942 + -3.3
2,592,943 - -1.2
2,592,995 + -0.4
2,593,144 + -1.4
2,593,163 + +0.2
2,593,163 + +0.7
2,593,171 - -0.6
2,593,228 - -0.4
2,593,365 - DVU2483 0.16 -1.4
2,593,422 - DVU2483 0.19 +0.7
2,593,470 + DVU2483 0.22 -0.6
2,593,653 - DVU2483 0.32 +0.3
2,593,794 + DVU2483 0.40 -2.0
2,593,847 - DVU2483 0.43 -0.7
2,593,867 + DVU2483 0.44 +0.1
2,593,885 - DVU2483 0.45 -0.7
2,593,890 - DVU2483 0.46 -0.8
2,593,902 + DVU2483 0.46 -0.6
2,593,910 - DVU2483 0.47 -0.3
2,593,917 - DVU2483 0.47 +0.0
2,594,025 - DVU2483 0.53 -1.9

Or see this region's nucleotide sequence