Experiment: MoLS4 with L-Leucine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdoH and fdnG-2 are separated by 110 nucleotides fdnG-2 and DVU2483 are separated by 16 nucleotides
DVU2481: fdoH - formate dehydrogenase, beta subunit, putative (TIGR), at 2,589,171 to 2,589,953
fdoH
DVU2482: fdnG-2 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 2,590,064 to 2,593,075
fdnG-2
DVU2483: DVU2483 - cytochrome c family protein (TIGR), at 2,593,092 to 2,594,837
DVU2483
Position (kb)
2590
2591
2592
2593
2594 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2589.066 kb on + strand at 2589.139 kb on - strand at 2589.150 kb on - strand at 2589.282 kb on - strand, within fdoH at 2589.412 kb on + strand, within fdoH at 2589.546 kb on + strand, within fdoH at 2589.576 kb on - strand, within fdoH at 2589.634 kb on + strand, within fdoH at 2589.647 kb on + strand, within fdoH at 2589.712 kb on - strand, within fdoH at 2589.728 kb on + strand, within fdoH at 2589.736 kb on - strand, within fdoH at 2589.770 kb on + strand, within fdoH at 2589.820 kb on - strand, within fdoH at 2589.897 kb on + strand at 2589.900 kb on - strand at 2590.003 kb on - strand at 2590.061 kb on + strand at 2590.068 kb on + strand at 2590.068 kb on + strand at 2590.069 kb on - strand at 2590.069 kb on - strand at 2590.069 kb on - strand at 2590.076 kb on - strand at 2590.097 kb on + strand at 2590.134 kb on + strand at 2590.235 kb on - strand at 2590.382 kb on - strand, within fdnG-2 at 2590.453 kb on - strand, within fdnG-2 at 2590.488 kb on + strand, within fdnG-2 at 2590.521 kb on + strand, within fdnG-2 at 2590.760 kb on + strand, within fdnG-2 at 2590.768 kb on - strand, within fdnG-2 at 2590.768 kb on - strand, within fdnG-2 at 2590.768 kb on - strand, within fdnG-2 at 2590.813 kb on + strand, within fdnG-2 at 2590.813 kb on + strand, within fdnG-2 at 2590.821 kb on - strand, within fdnG-2 at 2590.821 kb on - strand, within fdnG-2 at 2590.847 kb on + strand, within fdnG-2 at 2590.878 kb on + strand, within fdnG-2 at 2590.960 kb on - strand, within fdnG-2 at 2591.137 kb on + strand, within fdnG-2 at 2591.173 kb on - strand, within fdnG-2 at 2591.259 kb on + strand, within fdnG-2 at 2591.277 kb on + strand, within fdnG-2 at 2591.285 kb on - strand, within fdnG-2 at 2591.285 kb on - strand, within fdnG-2 at 2591.294 kb on + strand, within fdnG-2 at 2591.302 kb on - strand, within fdnG-2 at 2591.306 kb on - strand, within fdnG-2 at 2591.310 kb on + strand, within fdnG-2 at 2591.350 kb on + strand, within fdnG-2 at 2591.358 kb on - strand, within fdnG-2 at 2591.369 kb on + strand, within fdnG-2 at 2591.384 kb on - strand, within fdnG-2 at 2591.403 kb on - strand, within fdnG-2 at 2591.439 kb on + strand, within fdnG-2 at 2591.447 kb on - strand, within fdnG-2 at 2591.447 kb on - strand, within fdnG-2 at 2591.511 kb on + strand, within fdnG-2 at 2591.513 kb on - strand, within fdnG-2 at 2591.594 kb on + strand, within fdnG-2 at 2591.637 kb on + strand, within fdnG-2 at 2591.656 kb on + strand, within fdnG-2 at 2591.860 kb on + strand, within fdnG-2 at 2591.868 kb on - strand, within fdnG-2 at 2591.916 kb on + strand, within fdnG-2 at 2591.916 kb on + strand, within fdnG-2 at 2591.924 kb on - strand, within fdnG-2 at 2591.924 kb on - strand, within fdnG-2 at 2592.051 kb on + strand, within fdnG-2 at 2592.272 kb on - strand, within fdnG-2 at 2592.272 kb on - strand, within fdnG-2 at 2592.334 kb on - strand, within fdnG-2 at 2592.341 kb on + strand, within fdnG-2 at 2592.391 kb on - strand, within fdnG-2 at 2592.498 kb on - strand, within fdnG-2 at 2592.533 kb on - strand, within fdnG-2 at 2592.564 kb on + strand, within fdnG-2 at 2592.607 kb on - strand, within fdnG-2 at 2592.675 kb on + strand, within fdnG-2 at 2592.752 kb on + strand, within fdnG-2 at 2592.752 kb on + strand, within fdnG-2 at 2592.760 kb on - strand, within fdnG-2 at 2592.760 kb on - strand, within fdnG-2 at 2592.760 kb on - strand, within fdnG-2 at 2592.760 kb on - strand, within fdnG-2 at 2592.760 kb on - strand, within fdnG-2 at 2592.771 kb on + strand, within fdnG-2 at 2592.807 kb on + strand at 2592.815 kb on - strand at 2592.852 kb on + strand at 2592.876 kb on + strand at 2592.887 kb on + strand at 2592.942 kb on + strand at 2592.943 kb on - strand at 2592.995 kb on + strand at 2593.144 kb on + strand at 2593.163 kb on + strand at 2593.163 kb on + strand at 2593.171 kb on - strand at 2593.228 kb on - strand at 2593.365 kb on - strand, within DVU2483 at 2593.422 kb on - strand, within DVU2483 at 2593.470 kb on + strand, within DVU2483 at 2593.653 kb on - strand, within DVU2483 at 2593.794 kb on + strand, within DVU2483 at 2593.847 kb on - strand, within DVU2483 at 2593.867 kb on + strand, within DVU2483 at 2593.885 kb on - strand, within DVU2483 at 2593.890 kb on - strand, within DVU2483 at 2593.902 kb on + strand, within DVU2483 at 2593.910 kb on - strand, within DVU2483 at 2593.917 kb on - strand, within DVU2483 at 2594.025 kb on - strand, within DVU2483
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM remove 2,589,066 + -0.0 2,589,139 - +0.5 2,589,150 - -1.5 2,589,282 - fdoH DVU2481 0.14 -0.6 2,589,412 + fdoH DVU2481 0.31 +1.0 2,589,546 + fdoH DVU2481 0.48 -0.1 2,589,576 - fdoH DVU2481 0.52 -1.8 2,589,634 + fdoH DVU2481 0.59 +2.3 2,589,647 + fdoH DVU2481 0.61 +0.1 2,589,712 - fdoH DVU2481 0.69 -0.1 2,589,728 + fdoH DVU2481 0.71 +0.2 2,589,736 - fdoH DVU2481 0.72 +0.1 2,589,770 + fdoH DVU2481 0.77 +1.9 2,589,820 - fdoH DVU2481 0.83 -0.1 2,589,897 + -1.2 2,589,900 - +0.2 2,590,003 - +1.3 2,590,061 + -0.4 2,590,068 + -1.3 2,590,068 + -1.6 2,590,069 - +0.5 2,590,069 - -0.5 2,590,069 - +0.3 2,590,076 - -1.6 2,590,097 + +0.7 2,590,134 + +0.3 2,590,235 - -0.4 2,590,382 - fdnG-2 DVU2482 0.11 -1.0 2,590,453 - fdnG-2 DVU2482 0.13 -0.9 2,590,488 + fdnG-2 DVU2482 0.14 +0.0 2,590,521 + fdnG-2 DVU2482 0.15 -0.5 2,590,760 + fdnG-2 DVU2482 0.23 -0.4 2,590,768 - fdnG-2 DVU2482 0.23 +0.3 2,590,768 - fdnG-2 DVU2482 0.23 -0.2 2,590,768 - fdnG-2 DVU2482 0.23 -0.3 2,590,813 + fdnG-2 DVU2482 0.25 -0.3 2,590,813 + fdnG-2 DVU2482 0.25 -0.4 2,590,821 - fdnG-2 DVU2482 0.25 -0.2 2,590,821 - fdnG-2 DVU2482 0.25 -2.4 2,590,847 + fdnG-2 DVU2482 0.26 -1.0 2,590,878 + fdnG-2 DVU2482 0.27 -1.0 2,590,960 - fdnG-2 DVU2482 0.30 -1.1 2,591,137 + fdnG-2 DVU2482 0.36 -0.3 2,591,173 - fdnG-2 DVU2482 0.37 -0.8 2,591,259 + fdnG-2 DVU2482 0.40 -2.1 2,591,277 + fdnG-2 DVU2482 0.40 -0.4 2,591,285 - fdnG-2 DVU2482 0.41 -1.0 2,591,285 - fdnG-2 DVU2482 0.41 +0.3 2,591,294 + fdnG-2 DVU2482 0.41 +0.3 2,591,302 - fdnG-2 DVU2482 0.41 -1.2 2,591,306 - fdnG-2 DVU2482 0.41 +0.3 2,591,310 + fdnG-2 DVU2482 0.41 -0.6 2,591,350 + fdnG-2 DVU2482 0.43 +0.9 2,591,358 - fdnG-2 DVU2482 0.43 -0.5 2,591,369 + fdnG-2 DVU2482 0.43 -0.0 2,591,384 - fdnG-2 DVU2482 0.44 -2.0 2,591,403 - fdnG-2 DVU2482 0.44 +0.4 2,591,439 + fdnG-2 DVU2482 0.46 -0.6 2,591,447 - fdnG-2 DVU2482 0.46 -0.2 2,591,447 - fdnG-2 DVU2482 0.46 -0.1 2,591,511 + fdnG-2 DVU2482 0.48 -0.9 2,591,513 - fdnG-2 DVU2482 0.48 -1.2 2,591,594 + fdnG-2 DVU2482 0.51 +1.7 2,591,637 + fdnG-2 DVU2482 0.52 -0.7 2,591,656 + fdnG-2 DVU2482 0.53 -2.0 2,591,860 + fdnG-2 DVU2482 0.60 +0.1 2,591,868 - fdnG-2 DVU2482 0.60 -0.1 2,591,916 + fdnG-2 DVU2482 0.61 +0.9 2,591,916 + fdnG-2 DVU2482 0.61 -1.8 2,591,924 - fdnG-2 DVU2482 0.62 -1.5 2,591,924 - fdnG-2 DVU2482 0.62 +0.3 2,592,051 + fdnG-2 DVU2482 0.66 -0.3 2,592,272 - fdnG-2 DVU2482 0.73 -0.9 2,592,272 - fdnG-2 DVU2482 0.73 -1.3 2,592,334 - fdnG-2 DVU2482 0.75 -1.7 2,592,341 + fdnG-2 DVU2482 0.76 +0.6 2,592,391 - fdnG-2 DVU2482 0.77 +0.3 2,592,498 - fdnG-2 DVU2482 0.81 +0.0 2,592,533 - fdnG-2 DVU2482 0.82 -1.0 2,592,564 + fdnG-2 DVU2482 0.83 +0.2 2,592,607 - fdnG-2 DVU2482 0.84 +0.0 2,592,675 + fdnG-2 DVU2482 0.87 -1.3 2,592,752 + fdnG-2 DVU2482 0.89 -0.5 2,592,752 + fdnG-2 DVU2482 0.89 +0.2 2,592,760 - fdnG-2 DVU2482 0.90 -1.4 2,592,760 - fdnG-2 DVU2482 0.90 +0.2 2,592,760 - fdnG-2 DVU2482 0.90 -2.0 2,592,760 - fdnG-2 DVU2482 0.90 -0.5 2,592,760 - fdnG-2 DVU2482 0.90 +0.8 2,592,771 + fdnG-2 DVU2482 0.90 +0.1 2,592,807 + +0.3 2,592,815 - -1.4 2,592,852 + -0.5 2,592,876 + -0.2 2,592,887 + -1.4 2,592,942 + -3.3 2,592,943 - -1.2 2,592,995 + -0.4 2,593,144 + -1.4 2,593,163 + +0.2 2,593,163 + +0.7 2,593,171 - -0.6 2,593,228 - -0.4 2,593,365 - DVU2483 0.16 -1.4 2,593,422 - DVU2483 0.19 +0.7 2,593,470 + DVU2483 0.22 -0.6 2,593,653 - DVU2483 0.32 +0.3 2,593,794 + DVU2483 0.40 -2.0 2,593,847 - DVU2483 0.43 -0.7 2,593,867 + DVU2483 0.44 +0.1 2,593,885 - DVU2483 0.45 -0.7 2,593,890 - DVU2483 0.46 -0.8 2,593,902 + DVU2483 0.46 -0.6 2,593,910 - DVU2483 0.47 -0.3 2,593,917 - DVU2483 0.47 +0.0 2,594,025 - DVU2483 0.53 -1.9
Or see this region's nucleotide sequence