Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02861 and SMc02862 overlap by 1 nucleotides SMc02862 and SMc02863 are separated by 234 nucleotides
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
SMc02862: SMc02862 - Pit accessory protein, at 215,918 to 216,562
SMc02862
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1 at 214.940 kb on - strand at 215.270 kb on - strand, within SMc02861 at 215.363 kb on - strand, within SMc02861 at 215.783 kb on - strand, within SMc02861 at 215.783 kb on - strand, within SMc02861 at 215.997 kb on + strand, within SMc02862 at 216.017 kb on - strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.765 kb on + strand at 216.766 kb on - strand at 216.766 kb on - strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 217.157 kb on - strand, within SMc02863 at 217.536 kb on - strand, within SMc02863
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 214,940 - +0.1 215,270 - SMc02861 0.35 +0.3 215,363 - SMc02861 0.45 -1.3 215,783 - SMc02861 0.86 +0.9 215,783 - SMc02861 0.86 +0.9 215,997 + SMc02862 0.12 -0.7 216,017 - SMc02862 0.15 -0.7 216,018 + SMc02862 0.16 +0.2 216,018 + SMc02862 0.16 -1.9 216,018 + SMc02862 0.16 +0.0 216,019 - SMc02862 0.16 -0.7 216,019 - SMc02862 0.16 -1.5 216,019 - SMc02862 0.16 -1.0 216,019 - SMc02862 0.16 -0.5 216,019 - SMc02862 0.16 -0.6 216,765 + +0.4 216,766 - +0.1 216,766 - +0.8 216,848 + -0.7 216,848 + -1.2 216,848 + -0.5 216,848 + -1.1 216,848 + -0.2 216,849 - -0.1 216,849 - +0.5 216,849 - +0.1 216,849 - +0.5 217,157 - SMc02863 0.32 +0.3 217,536 - SMc02863 0.66 +1.0
Or see this region's nucleotide sequence