Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01704 and SMc01703 are separated by 513 nucleotides SMc01703 and SMc01702 are separated by 22 nucleotides
SMc01704: SMc01704 - hypothetical protein, at 508,266 to 508,943
SMc01704
SMc01703: SMc01703 - hypothetical protein, at 509,457 to 509,888
SMc01703
SMc01702: SMc01702 - oxidoreductase, at 509,911 to 510,897
SMc01702
Position (kb) 509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 508.460 kb on + strand, within SMc01704 at 508.461 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.480 kb on + strand, within SMc01704 at 508.481 kb on - strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.841 kb on - strand, within SMc01704 at 508.841 kb on - strand, within SMc01704 at 509.003 kb on - strand at 509.003 kb on - strand at 509.046 kb on + strand at 509.047 kb on - strand at 509.047 kb on - strand at 509.047 kb on - strand at 509.098 kb on + strand at 509.173 kb on - strand at 509.200 kb on - strand at 509.200 kb on - strand at 509.200 kb on - strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.346 kb on - strand at 509.346 kb on - strand at 509.346 kb on - strand at 509.346 kb on - strand at 509.351 kb on + strand at 509.352 kb on - strand at 509.352 kb on - strand at 509.352 kb on - strand at 509.354 kb on - strand at 509.354 kb on - strand at 509.509 kb on + strand, within SMc01703 at 509.510 kb on - strand, within SMc01703 at 509.609 kb on + strand, within SMc01703 at 509.610 kb on - strand, within SMc01703 at 509.693 kb on - strand, within SMc01703 at 509.726 kb on - strand, within SMc01703 at 509.729 kb on - strand, within SMc01703 at 509.834 kb on - strand, within SMc01703 at 509.897 kb on + strand at 510.340 kb on + strand, within SMc01702 at 510.340 kb on + strand, within SMc01702 at 510.371 kb on + strand, within SMc01702 at 510.372 kb on - strand, within SMc01702 at 510.449 kb on + strand, within SMc01702 at 510.512 kb on + strand, within SMc01702 at 510.512 kb on + strand, within SMc01702 at 510.512 kb on + strand, within SMc01702 at 510.513 kb on - strand, within SMc01702 at 510.601 kb on - strand, within SMc01702 at 510.612 kb on + strand, within SMc01702 at 510.614 kb on + strand, within SMc01702 at 510.614 kb on + strand, within SMc01702 at 510.615 kb on - strand, within SMc01702
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 508,460 + SMc01704 0.29 -0.2 508,461 - SMc01704 0.29 -1.8 508,463 - SMc01704 0.29 -0.2 508,463 - SMc01704 0.29 -0.8 508,463 - SMc01704 0.29 -0.3 508,480 + SMc01704 0.32 +0.5 508,481 - SMc01704 0.32 +0.9 508,840 + SMc01704 0.85 -0.3 508,840 + SMc01704 0.85 -1.2 508,840 + SMc01704 0.85 +0.7 508,840 + SMc01704 0.85 -0.4 508,840 + SMc01704 0.85 +0.4 508,840 + SMc01704 0.85 +0.3 508,840 + SMc01704 0.85 -0.3 508,841 - SMc01704 0.85 +1.1 508,841 - SMc01704 0.85 +0.3 509,003 - +0.6 509,003 - +0.1 509,046 + -0.3 509,047 - +0.1 509,047 - +0.2 509,047 - +0.4 509,098 + +0.3 509,173 - +1.3 509,200 - -0.3 509,200 - +0.2 509,200 - +0.0 509,345 + -0.2 509,345 + -0.1 509,345 + +0.4 509,345 + -0.2 509,345 + +0.5 509,345 + +1.4 509,345 + -0.3 509,346 - -0.5 509,346 - +0.1 509,346 - -0.1 509,346 - -0.6 509,351 + +0.1 509,352 - -0.0 509,352 - +0.1 509,352 - +0.2 509,354 - -0.0 509,354 - +0.7 509,509 + SMc01703 0.12 -2.1 509,510 - SMc01703 0.12 -0.0 509,609 + SMc01703 0.35 -0.5 509,610 - SMc01703 0.35 -2.1 509,693 - SMc01703 0.55 -1.0 509,726 - SMc01703 0.62 +0.7 509,729 - SMc01703 0.63 -0.0 509,834 - SMc01703 0.87 -0.7 509,897 + -0.2 510,340 + SMc01702 0.43 +1.2 510,340 + SMc01702 0.43 -0.4 510,371 + SMc01702 0.47 -0.1 510,372 - SMc01702 0.47 -0.4 510,449 + SMc01702 0.55 -0.3 510,512 + SMc01702 0.61 -0.1 510,512 + SMc01702 0.61 -1.5 510,512 + SMc01702 0.61 +0.5 510,513 - SMc01702 0.61 +0.7 510,601 - SMc01702 0.70 -0.1 510,612 + SMc01702 0.71 -0.1 510,614 + SMc01702 0.71 +1.2 510,614 + SMc01702 0.71 -0.0 510,615 - SMc01702 0.71 +0.3
Or see this region's nucleotide sequence