Strain Fitness in Sinorhizobium meliloti 1021 around SMc01191

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01192 and SMc01191 are separated by 229 nucleotidesSMc01191 and SMc01190 are separated by 90 nucleotides SMc01192: SMc01192 - methionyl-tRNA synthetase, at 1,737,572 to 1,739,122 SMc01192 SMc01191: SMc01191 - hypothetical protein, at 1,739,352 to 1,739,663 SMc01191 SMc01190: SMc01190 - DNA polymerase III subunit delta', at 1,739,754 to 1,740,785 SMc01190 Position (kb) 1739 1740Strain fitness (log2 ratio) -1 0 1at 1739.154 kb on - strandat 1739.154 kb on - strandat 1739.154 kb on - strandat 1739.154 kb on - strandat 1739.163 kb on - strandat 1739.184 kb on - strandat 1739.299 kb on + strandat 1739.300 kb on - strandat 1739.300 kb on - strandat 1739.437 kb on - strand, within SMc01191at 1739.437 kb on - strand, within SMc01191at 1739.438 kb on + strand, within SMc01191at 1739.438 kb on - strand, within SMc01191at 1739.439 kb on - strand, within SMc01191at 1739.564 kb on + strand, within SMc01191at 1739.564 kb on + strand, within SMc01191at 1739.565 kb on - strand, within SMc01191at 1739.623 kb on + strand, within SMc01191at 1739.662 kb on - strandat 1739.678 kb on - strandat 1739.703 kb on + strandat 1739.703 kb on + strandat 1739.756 kb on - strandat 1739.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,739,154 - -0.7
1,739,154 - -0.4
1,739,154 - -1.2
1,739,154 - +0.9
1,739,163 - -0.5
1,739,184 - +1.1
1,739,299 + -0.2
1,739,300 - -0.3
1,739,300 - +0.7
1,739,437 - SMc01191 0.27 -0.6
1,739,437 - SMc01191 0.27 +0.0
1,739,438 + SMc01191 0.28 +1.4
1,739,438 - SMc01191 0.28 +0.1
1,739,439 - SMc01191 0.28 -0.4
1,739,564 + SMc01191 0.68 +0.2
1,739,564 + SMc01191 0.68 +1.5
1,739,565 - SMc01191 0.68 +1.1
1,739,623 + SMc01191 0.87 +0.2
1,739,662 - +0.3
1,739,678 - -1.2
1,739,703 + -0.7
1,739,703 + +0.8
1,739,756 - +0.9
1,739,758 - +0.1

Or see this region's nucleotide sequence