Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00699 and SMc00698 are separated by 226 nucleotides SMc00698 and SMc00697 are separated by 276 nucleotides SMc00697 and SMc00696 overlap by 4 nucleotides
SMc00699: SMc00699 - hypothetical protein, at 2,880,906 to 2,881,454
SMc00699
SMc00698: SMc00698 - transcriptional regulator, at 2,881,681 to 2,881,962
SMc00698
SMc00697: SMc00697 - hypothetical protein, at 2,882,239 to 2,883,543
SMc00697
SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673
SMc00696
Position (kb)
2882
2883
2884 Strain fitness (log2 ratio)
-2
-1
0
1 at 2881.543 kb on - strand at 2881.809 kb on + strand, within SMc00698 at 2881.809 kb on + strand, within SMc00698 at 2881.839 kb on + strand, within SMc00698 at 2881.840 kb on - strand, within SMc00698 at 2881.988 kb on - strand at 2882.217 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.223 kb on + strand at 2882.317 kb on - strand at 2882.331 kb on - strand at 2882.497 kb on + strand, within SMc00697 at 2882.814 kb on + strand, within SMc00697 at 2882.815 kb on - strand, within SMc00697 at 2882.815 kb on - strand, within SMc00697 at 2883.101 kb on - strand, within SMc00697 at 2883.358 kb on + strand, within SMc00697 at 2883.358 kb on + strand, within SMc00697 at 2883.359 kb on - strand, within SMc00697 at 2883.359 kb on - strand, within SMc00697 at 2883.409 kb on - strand, within SMc00697 at 2883.472 kb on - strand at 2883.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,881,543 - +0.9 2,881,809 + SMc00698 0.45 -0.6 2,881,809 + SMc00698 0.45 +0.1 2,881,839 + SMc00698 0.56 -1.1 2,881,840 - SMc00698 0.56 -0.7 2,881,988 - +0.1 2,882,217 + +0.4 2,882,223 + +1.2 2,882,223 + +0.2 2,882,223 + -0.1 2,882,223 + +0.1 2,882,223 + -0.2 2,882,223 + +0.8 2,882,223 + -0.1 2,882,223 + +0.0 2,882,223 + +0.1 2,882,317 - +0.6 2,882,331 - +0.7 2,882,497 + SMc00697 0.20 -0.9 2,882,814 + SMc00697 0.44 +0.1 2,882,815 - SMc00697 0.44 -0.0 2,882,815 - SMc00697 0.44 +0.2 2,883,101 - SMc00697 0.66 +0.0 2,883,358 + SMc00697 0.86 -0.1 2,883,358 + SMc00697 0.86 -0.2 2,883,359 - SMc00697 0.86 +0.2 2,883,359 - SMc00697 0.86 -0.2 2,883,409 - SMc00697 0.90 -2.1 2,883,472 - +0.2 2,883,510 - -0.4
Or see this region's nucleotide sequence