Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1737 and SMa1740 are separated by 467 nucleotides SMa1740 and SMa1741 overlap by 4 nucleotides SMa1741 and SMa1742 overlap by 1 nucleotides
SMa1737: SMa1737 - hypothetical protein, at 982,470 to 983,528
SMa1737
SMa1740: SMa1740 - Siderophore-interacting protein, at 983,996 to 985,066
SMa1740
SMa1741: SMa1741 - ABC transporter ATP-binding protein, at 985,063 to 985,905
SMa1741
SMa1742: SMa1742 - Fe3+-siderophore ABC transporter permease, at 985,905 to 986,942
SMa1742
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 982.996 kb on + strand, within SMa1737 at 983.028 kb on + strand, within SMa1737 at 983.203 kb on + strand, within SMa1737 at 983.204 kb on - strand, within SMa1737 at 983.381 kb on - strand, within SMa1737 at 983.381 kb on - strand, within SMa1737 at 983.386 kb on + strand, within SMa1737 at 983.386 kb on + strand, within SMa1737 at 983.435 kb on + strand at 983.714 kb on + strand at 983.714 kb on + strand at 983.739 kb on + strand at 983.739 kb on + strand at 983.740 kb on - strand at 983.740 kb on - strand at 983.761 kb on + strand at 983.812 kb on + strand at 983.878 kb on - strand at 983.909 kb on + strand at 983.992 kb on + strand at 983.992 kb on + strand at 983.993 kb on - strand at 984.036 kb on + strand at 984.036 kb on + strand at 984.037 kb on - strand at 984.037 kb on - strand at 984.037 kb on - strand at 984.082 kb on + strand at 984.083 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.192 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.285 kb on - strand, within SMa1740 at 984.287 kb on - strand, within SMa1740 at 984.324 kb on - strand, within SMa1740 at 984.324 kb on - strand, within SMa1740 at 984.529 kb on + strand, within SMa1740 at 984.530 kb on - strand, within SMa1740 at 984.530 kb on - strand, within SMa1740 at 984.531 kb on + strand, within SMa1740 at 984.531 kb on + strand, within SMa1740 at 984.531 kb on + strand, within SMa1740 at 984.532 kb on - strand, within SMa1740 at 984.532 kb on - strand, within SMa1740 at 984.668 kb on + strand, within SMa1740 at 984.923 kb on + strand, within SMa1740 at 984.924 kb on - strand, within SMa1740 at 985.019 kb on - strand at 985.136 kb on - strand at 985.327 kb on - strand, within SMa1741 at 985.942 kb on + strand at 985.943 kb on - strand at 985.943 kb on - strand at 985.944 kb on + strand at 985.951 kb on + strand at 985.951 kb on + strand at 985.983 kb on + strand at 985.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 982,996 + SMa1737 0.50 -0.0 983,028 + SMa1737 0.53 -0.4 983,203 + SMa1737 0.69 +1.3 983,204 - SMa1737 0.69 -0.7 983,381 - SMa1737 0.86 -0.4 983,381 - SMa1737 0.86 +0.1 983,386 + SMa1737 0.86 +0.3 983,386 + SMa1737 0.86 +0.5 983,435 + -1.0 983,714 + -0.2 983,714 + +0.5 983,739 + -0.1 983,739 + -0.0 983,740 - +0.0 983,740 - +0.8 983,761 + +0.4 983,812 + +0.3 983,878 - +0.1 983,909 + -0.0 983,992 + -0.3 983,992 + -0.3 983,993 - -0.1 984,036 + -0.1 984,036 + -0.1 984,037 - +0.1 984,037 - +0.1 984,037 - -0.2 984,082 + +0.7 984,083 - +1.0 984,090 - +0.3 984,090 - -3.3 984,090 - +0.2 984,090 - +0.4 984,090 - +0.6 984,192 + SMa1740 0.18 -1.8 984,284 + SMa1740 0.27 +0.1 984,284 + SMa1740 0.27 -0.0 984,284 + SMa1740 0.27 -2.4 984,284 + SMa1740 0.27 -0.7 984,285 - SMa1740 0.27 -0.2 984,287 - SMa1740 0.27 +0.1 984,324 - SMa1740 0.31 +0.1 984,324 - SMa1740 0.31 -0.8 984,529 + SMa1740 0.50 -0.0 984,530 - SMa1740 0.50 -0.3 984,530 - SMa1740 0.50 +0.2 984,531 + SMa1740 0.50 +0.5 984,531 + SMa1740 0.50 -1.5 984,531 + SMa1740 0.50 +0.7 984,532 - SMa1740 0.50 -0.3 984,532 - SMa1740 0.50 +0.3 984,668 + SMa1740 0.63 -1.5 984,923 + SMa1740 0.87 -0.1 984,924 - SMa1740 0.87 -0.3 985,019 - +0.4 985,136 - +0.2 985,327 - SMa1741 0.31 -0.7 985,942 + +0.9 985,943 - +0.1 985,943 - +0.7 985,944 + -0.2 985,951 + +0.9 985,951 + -0.2 985,983 + -1.2 985,984 - -0.4
Or see this region's nucleotide sequence