Strain Fitness in Sinorhizobium meliloti 1021 around SMa1142

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1139 and SMa1141 are separated by 128 nucleotidesSMa1141 and SMa1142 overlap by 1 nucleotidesSMa1142 and SMa1146 are separated by 139 nucleotides SMa1139: SMa1139 - hypothetical protein, at 620,850 to 621,116 SMa1139 SMa1141: SMa1141 - FNR/CRP family transcriptional regulator, at 621,245 to 622,009 SMa1141 SMa1142: SMa1142 - FixL-related histidine kinase, at 622,009 to 623,595 SMa1142 SMa1146: SMa1146 - hypothetical protein, at 623,735 to 626,434 SMa1146 Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1 2at 621.153 kb on + strandat 621.153 kb on + strandat 621.153 kb on + strandat 621.158 kb on + strandat 621.159 kb on - strandat 621.163 kb on + strandat 621.164 kb on - strandat 621.262 kb on + strandat 621.331 kb on - strand, within SMa1141at 621.403 kb on + strand, within SMa1141at 621.424 kb on + strand, within SMa1141at 621.424 kb on + strand, within SMa1141at 621.522 kb on - strand, within SMa1141at 621.522 kb on - strand, within SMa1141at 621.522 kb on - strand, within SMa1141at 621.525 kb on + strand, within SMa1141at 621.528 kb on - strand, within SMa1141at 621.528 kb on - strand, within SMa1141at 621.832 kb on + strand, within SMa1141at 621.833 kb on - strand, within SMa1141at 621.834 kb on + strand, within SMa1141at 621.959 kb on + strandat 621.974 kb on - strandat 622.063 kb on - strandat 622.143 kb on - strandat 622.202 kb on - strand, within SMa1142at 622.226 kb on + strand, within SMa1142at 622.227 kb on - strand, within SMa1142at 622.289 kb on - strand, within SMa1142at 622.289 kb on - strand, within SMa1142at 622.289 kb on - strand, within SMa1142at 622.607 kb on + strand, within SMa1142at 622.608 kb on - strand, within SMa1142at 622.661 kb on + strand, within SMa1142at 622.763 kb on + strand, within SMa1142at 622.763 kb on + strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.835 kb on + strand, within SMa1142at 622.906 kb on - strand, within SMa1142at 622.937 kb on + strand, within SMa1142at 622.960 kb on + strand, within SMa1142at 622.961 kb on - strand, within SMa1142at 622.961 kb on - strand, within SMa1142at 622.961 kb on - strand, within SMa1142at 623.086 kb on + strand, within SMa1142at 623.115 kb on + strand, within SMa1142at 623.115 kb on + strand, within SMa1142at 623.115 kb on + strand, within SMa1142at 623.116 kb on - strand, within SMa1142at 623.126 kb on - strand, within SMa1142at 623.126 kb on - strand, within SMa1142at 623.127 kb on + strand, within SMa1142at 623.232 kb on + strand, within SMa1142at 623.409 kb on - strand, within SMa1142at 623.409 kb on - strand, within SMa1142at 623.423 kb on + strand, within SMa1142at 623.424 kb on - strand, within SMa1142at 623.494 kb on + strandat 623.548 kb on + strandat 623.618 kb on + strandat 623.618 kb on + strandat 623.624 kb on + strandat 623.634 kb on + strandat 623.635 kb on - strandat 623.638 kb on - strandat 623.638 kb on - strandat 623.912 kb on + strandat 624.006 kb on + strand, within SMa1146at 624.006 kb on + strand, within SMa1146at 624.006 kb on + strand, within SMa1146at 624.007 kb on - strand, within SMa1146at 624.043 kb on + strand, within SMa1146at 624.109 kb on - strand, within SMa1146at 624.257 kb on + strand, within SMa1146at 624.331 kb on - strand, within SMa1146at 624.331 kb on - strand, within SMa1146at 624.366 kb on - strand, within SMa1146at 624.490 kb on + strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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621,153 + -0.7
621,153 + +0.3
621,153 + +0.6
621,158 + -0.4
621,159 - +0.0
621,163 + +1.1
621,164 - +1.0
621,262 + -0.3
621,331 - SMa1141 0.11 +0.1
621,403 + SMa1141 0.21 +0.9
621,424 + SMa1141 0.23 +0.2
621,424 + SMa1141 0.23 -0.4
621,522 - SMa1141 0.36 +1.0
621,522 - SMa1141 0.36 -1.6
621,522 - SMa1141 0.36 -0.5
621,525 + SMa1141 0.37 +0.7
621,528 - SMa1141 0.37 +0.4
621,528 - SMa1141 0.37 -0.6
621,832 + SMa1141 0.77 +0.3
621,833 - SMa1141 0.77 +0.9
621,834 + SMa1141 0.77 +0.9
621,959 + +0.7
621,974 - +1.0
622,063 - -0.9
622,143 - +0.2
622,202 - SMa1142 0.12 +0.2
622,226 + SMa1142 0.14 +0.9
622,227 - SMa1142 0.14 -0.3
622,289 - SMa1142 0.18 +0.8
622,289 - SMa1142 0.18 -0.2
622,289 - SMa1142 0.18 -0.8
622,607 + SMa1142 0.38 +0.2
622,608 - SMa1142 0.38 +1.3
622,661 + SMa1142 0.41 -2.3
622,763 + SMa1142 0.48 +0.2
622,763 + SMa1142 0.48 +0.1
622,764 - SMa1142 0.48 -0.5
622,764 - SMa1142 0.48 +0.2
622,764 - SMa1142 0.48 +0.7
622,764 - SMa1142 0.48 +0.5
622,764 - SMa1142 0.48 +0.3
622,835 + SMa1142 0.52 +0.0
622,906 - SMa1142 0.57 +0.0
622,937 + SMa1142 0.58 +0.6
622,960 + SMa1142 0.60 +0.8
622,961 - SMa1142 0.60 -0.1
622,961 - SMa1142 0.60 +0.9
622,961 - SMa1142 0.60 -0.1
623,086 + SMa1142 0.68 +0.4
623,115 + SMa1142 0.70 +0.1
623,115 + SMa1142 0.70 -0.4
623,115 + SMa1142 0.70 +0.2
623,116 - SMa1142 0.70 +0.3
623,126 - SMa1142 0.70 +0.7
623,126 - SMa1142 0.70 +0.3
623,127 + SMa1142 0.70 -2.0
623,232 + SMa1142 0.77 +0.3
623,409 - SMa1142 0.88 +1.2
623,409 - SMa1142 0.88 -0.1
623,423 + SMa1142 0.89 +1.0
623,424 - SMa1142 0.89 -0.2
623,494 + +0.4
623,548 + +0.2
623,618 + +0.9
623,618 + -1.6
623,624 + +0.2
623,634 + +2.3
623,635 - +0.2
623,638 - -0.3
623,638 - +0.5
623,912 + +0.4
624,006 + SMa1146 0.10 +0.4
624,006 + SMa1146 0.10 -0.1
624,006 + SMa1146 0.10 +0.5
624,007 - SMa1146 0.10 -0.3
624,043 + SMa1146 0.11 -0.7
624,109 - SMa1146 0.14 +1.0
624,257 + SMa1146 0.19 -0.3
624,331 - SMa1146 0.22 +0.9
624,331 - SMa1146 0.22 +0.4
624,366 - SMa1146 0.23 -1.1
624,490 + SMa1146 0.28 -1.3
624,491 - SMa1146 0.28 -0.4
624,491 - SMa1146 0.28 +0.3
624,491 - SMa1146 0.28 +0.3
624,491 - SMa1146 0.28 +0.1
624,491 - SMa1146 0.28 -0.3

Or see this region's nucleotide sequence