Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21498 and SM_b21499 are separated by 2 nucleotides SM_b21499 and SM_b21500 overlap by 4 nucleotides
SM_b21498: SM_b21498 - acriflavin resistance protein, at 1,419,623 to 1,422,856
_b21498
SM_b21499: SM_b21499 - hypothetical protein, at 1,422,859 to 1,425,018
_b21499
SM_b21500: SM_b21500 - glycosyltransferase, at 1,425,015 to 1,426,058
_b21500
Position (kb)
1422
1423
1424
1425
1426 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1421.883 kb on - strand, within SM_b21498 at 1421.883 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.986 kb on - strand, within SM_b21498 at 1421.986 kb on - strand, within SM_b21498 at 1422.038 kb on + strand, within SM_b21498 at 1422.068 kb on + strand, within SM_b21498 at 1422.069 kb on - strand, within SM_b21498 at 1422.179 kb on + strand, within SM_b21498 at 1422.269 kb on + strand, within SM_b21498 at 1422.270 kb on - strand, within SM_b21498 at 1422.291 kb on - strand, within SM_b21498 at 1422.392 kb on + strand, within SM_b21498 at 1422.392 kb on + strand, within SM_b21498 at 1422.393 kb on - strand, within SM_b21498 at 1422.689 kb on + strand at 1422.689 kb on + strand at 1422.690 kb on - strand at 1422.860 kb on + strand at 1422.879 kb on - strand at 1423.025 kb on + strand at 1423.025 kb on + strand at 1423.025 kb on + strand at 1423.026 kb on - strand at 1423.272 kb on + strand, within SM_b21499 at 1423.501 kb on + strand, within SM_b21499 at 1423.502 kb on - strand, within SM_b21499 at 1423.502 kb on - strand, within SM_b21499 at 1423.582 kb on - strand, within SM_b21499 at 1423.582 kb on - strand, within SM_b21499 at 1423.670 kb on + strand, within SM_b21499 at 1423.675 kb on + strand, within SM_b21499 at 1423.675 kb on + strand, within SM_b21499 at 1423.772 kb on + strand, within SM_b21499 at 1423.830 kb on - strand, within SM_b21499 at 1423.886 kb on + strand, within SM_b21499 at 1423.886 kb on + strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand at 1423.962 kb on - strand, within SM_b21499 at 1424.025 kb on + strand, within SM_b21499 at 1424.030 kb on + strand, within SM_b21499 at 1424.030 kb on + strand, within SM_b21499 at 1424.031 kb on - strand, within SM_b21499 at 1424.031 kb on - strand, within SM_b21499 at 1424.291 kb on + strand, within SM_b21499 at 1424.402 kb on + strand, within SM_b21499 at 1424.402 kb on + strand, within SM_b21499 at 1424.564 kb on + strand, within SM_b21499 at 1424.564 kb on + strand, within SM_b21499 at 1424.597 kb on + strand, within SM_b21499 at 1424.598 kb on - strand, within SM_b21499 at 1424.694 kb on - strand, within SM_b21499 at 1424.694 kb on - strand, within SM_b21499 at 1424.786 kb on - strand, within SM_b21499 at 1424.786 kb on - strand, within SM_b21499 at 1425.172 kb on + strand, within SM_b21500 at 1425.173 kb on - strand, within SM_b21500 at 1425.173 kb on - strand, within SM_b21500 at 1425.263 kb on + strand, within SM_b21500 at 1425.264 kb on - strand, within SM_b21500 at 1425.310 kb on + strand, within SM_b21500 at 1425.311 kb on - strand, within SM_b21500 at 1425.364 kb on + strand, within SM_b21500 at 1425.390 kb on + strand, within SM_b21500 at 1425.390 kb on + strand, within SM_b21500 at 1425.412 kb on + strand, within SM_b21500 at 1425.412 kb on + strand, within SM_b21500 at 1425.413 kb on - strand, within SM_b21500 at 1425.413 kb on - strand, within SM_b21500 at 1425.547 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,421,883 - SM_b21498 0.70 +0.7 1,421,883 - SM_b21498 0.70 -0.7 1,421,886 - SM_b21498 0.70 +0.4 1,421,886 - SM_b21498 0.70 -0.2 1,421,886 - SM_b21498 0.70 -0.2 1,421,986 - SM_b21498 0.73 -0.4 1,421,986 - SM_b21498 0.73 -0.6 1,422,038 + SM_b21498 0.75 +0.4 1,422,068 + SM_b21498 0.76 -0.1 1,422,069 - SM_b21498 0.76 +0.1 1,422,179 + SM_b21498 0.79 -1.4 1,422,269 + SM_b21498 0.82 -0.5 1,422,270 - SM_b21498 0.82 -0.8 1,422,291 - SM_b21498 0.82 -0.8 1,422,392 + SM_b21498 0.86 -0.4 1,422,392 + SM_b21498 0.86 +0.2 1,422,393 - SM_b21498 0.86 -1.4 1,422,689 + -0.3 1,422,689 + -0.1 1,422,690 - +0.6 1,422,860 + -0.4 1,422,879 - -2.3 1,423,025 + +0.2 1,423,025 + +0.1 1,423,025 + -0.0 1,423,026 - +0.3 1,423,272 + SM_b21499 0.19 +0.9 1,423,501 + SM_b21499 0.30 +0.1 1,423,502 - SM_b21499 0.30 +1.0 1,423,502 - SM_b21499 0.30 -0.7 1,423,582 - SM_b21499 0.33 -0.0 1,423,582 - SM_b21499 0.33 +0.1 1,423,670 + SM_b21499 0.38 +1.5 1,423,675 + SM_b21499 0.38 +0.5 1,423,675 + SM_b21499 0.38 +0.1 1,423,772 + SM_b21499 0.42 -0.2 1,423,830 - SM_b21499 0.45 +0.0 1,423,886 + SM_b21499 0.48 +0.1 1,423,886 + SM_b21499 0.48 -0.3 1,423,887 - SM_b21499 0.48 +1.0 1,423,887 - SM_b21499 0.48 -0.4 1,423,887 - SM_b21499 0.48 -0.0 1,423,887 - SM_b21499 0.48 +0.3 1,423,887 - +3.8 1,423,962 - SM_b21499 0.51 -0.0 1,424,025 + SM_b21499 0.54 -0.1 1,424,030 + SM_b21499 0.54 +0.1 1,424,030 + SM_b21499 0.54 -0.1 1,424,031 - SM_b21499 0.54 +1.0 1,424,031 - SM_b21499 0.54 +0.5 1,424,291 + SM_b21499 0.66 -0.0 1,424,402 + SM_b21499 0.71 -0.3 1,424,402 + SM_b21499 0.71 -0.5 1,424,564 + SM_b21499 0.79 +0.6 1,424,564 + SM_b21499 0.79 -0.1 1,424,597 + SM_b21499 0.80 +0.7 1,424,598 - SM_b21499 0.81 +0.3 1,424,694 - SM_b21499 0.85 +0.0 1,424,694 - SM_b21499 0.85 +2.2 1,424,786 - SM_b21499 0.89 -0.0 1,424,786 - SM_b21499 0.89 -0.5 1,425,172 + SM_b21500 0.15 -0.4 1,425,173 - SM_b21500 0.15 -0.9 1,425,173 - SM_b21500 0.15 +0.2 1,425,263 + SM_b21500 0.24 +0.3 1,425,264 - SM_b21500 0.24 +0.1 1,425,310 + SM_b21500 0.28 -0.5 1,425,311 - SM_b21500 0.28 +0.1 1,425,364 + SM_b21500 0.33 +1.0 1,425,390 + SM_b21500 0.36 +0.0 1,425,390 + SM_b21500 0.36 -1.3 1,425,412 + SM_b21500 0.38 +0.5 1,425,412 + SM_b21500 0.38 -0.2 1,425,413 - SM_b21500 0.38 -1.8 1,425,413 - SM_b21500 0.38 -0.7 1,425,547 + SM_b21500 0.51 -0.6 1,425,596 + SM_b21500 0.56 -0.2 1,425,596 + SM_b21500 0.56 +0.4 1,425,814 + SM_b21500 0.77 +0.1 1,425,814 + SM_b21500 0.77 +0.4 1,425,815 - SM_b21500 0.77 +0.3 1,425,815 - SM_b21500 0.77 -0.7
Or see this region's nucleotide sequence