Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20887

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20886 and SM_b20887 are separated by 4 nucleotidesSM_b20887 and SM_b20888 are separated by 16 nucleotidesSM_b20888 and SM_b20889 are separated by 95 nucleotides SM_b20886: SM_b20886 - hypothetical protein, at 1,291,462 to 1,292,871 _b20886 SM_b20887: SM_b20887 - hypothetical protein, at 1,292,876 to 1,293,817 _b20887 SM_b20888: SM_b20888 - hypothetical protein, at 1,293,834 to 1,294,652 _b20888 SM_b20889: SM_b20889 - hypothetical protein, at 1,294,748 to 1,295,452 _b20889 Position (kb) 1292 1293 1294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1291.892 kb on + strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.912 kb on + strand, within SM_b20886at 1291.912 kb on + strand, within SM_b20886at 1291.913 kb on - strand, within SM_b20886at 1291.913 kb on - strand, within SM_b20886at 1291.913 kb on - strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.957 kb on + strand, within SM_b20886at 1291.957 kb on + strand, within SM_b20886at 1291.958 kb on - strand, within SM_b20886at 1291.958 kb on - strand, within SM_b20886at 1292.038 kb on + strand, within SM_b20886at 1292.039 kb on - strand, within SM_b20886at 1292.128 kb on + strand, within SM_b20886at 1292.128 kb on + strand, within SM_b20886at 1292.166 kb on + strand, within SM_b20886at 1292.167 kb on - strand, within SM_b20886at 1292.167 kb on - strand, within SM_b20886at 1292.256 kb on - strand, within SM_b20886at 1292.365 kb on - strand, within SM_b20886at 1292.417 kb on - strand, within SM_b20886at 1292.417 kb on - strand, within SM_b20886at 1292.422 kb on + strand, within SM_b20886at 1292.446 kb on + strand, within SM_b20886at 1292.515 kb on + strand, within SM_b20886at 1292.515 kb on + strand, within SM_b20886at 1292.515 kb on + strand, within SM_b20886at 1292.516 kb on - strand, within SM_b20886at 1292.573 kb on - strand, within SM_b20886at 1292.653 kb on + strand, within SM_b20886at 1292.653 kb on + strand, within SM_b20886at 1292.653 kb on + strand, within SM_b20886at 1292.653 kb on + strand, within SM_b20886at 1292.654 kb on - strand, within SM_b20886at 1292.740 kb on + strandat 1292.741 kb on - strandat 1292.741 kb on - strandat 1292.741 kb on - strandat 1292.850 kb on + strandat 1292.903 kb on + strandat 1292.919 kb on - strandat 1292.919 kb on - strandat 1292.919 kb on - strandat 1293.044 kb on + strand, within SM_b20887at 1293.342 kb on + strand, within SM_b20887at 1293.416 kb on + strand, within SM_b20887at 1293.416 kb on + strand, within SM_b20887at 1293.509 kb on + strand, within SM_b20887at 1293.509 kb on + strand, within SM_b20887at 1293.510 kb on - strand, within SM_b20887at 1293.510 kb on - strand, within SM_b20887at 1293.521 kb on + strand, within SM_b20887at 1293.521 kb on + strand, within SM_b20887at 1293.521 kb on + strand, within SM_b20887at 1293.522 kb on - strand, within SM_b20887at 1293.522 kb on - strand, within SM_b20887at 1293.522 kb on - strand, within SM_b20887at 1293.548 kb on - strand, within SM_b20887at 1293.596 kb on + strand, within SM_b20887at 1293.596 kb on + strand, within SM_b20887at 1293.602 kb on + strand, within SM_b20887at 1293.644 kb on + strand, within SM_b20887at 1293.722 kb on - strand, within SM_b20887at 1293.722 kb on - strand, within SM_b20887at 1293.735 kb on + strandat 1293.743 kb on + strandat 1293.744 kb on - strandat 1293.744 kb on - strandat 1293.809 kb on + strandat 1293.810 kb on - strandat 1293.810 kb on - strandat 1293.810 kb on - strandat 1293.832 kb on - strandat 1293.838 kb on - strandat 1293.838 kb on - strandat 1293.838 kb on - strandat 1293.864 kb on + strandat 1293.864 kb on + strandat 1293.865 kb on - strandat 1293.883 kb on + strandat 1293.888 kb on + strandat 1293.888 kb on + strandat 1293.888 kb on + strandat 1293.888 kb on + strandat 1293.888 kb on + strandat 1293.889 kb on - strandat 1293.987 kb on + strand, within SM_b20888at 1293.988 kb on - strand, within SM_b20888at 1294.054 kb on + strand, within SM_b20888at 1294.054 kb on + strand, within SM_b20888at 1294.055 kb on - strand, within SM_b20888at 1294.096 kb on + strand, within SM_b20888at 1294.097 kb on - strand, within SM_b20888at 1294.116 kb on + strand, within SM_b20888at 1294.116 kb on + strand, within SM_b20888at 1294.116 kb on + strand, within SM_b20888at 1294.116 kb on + strand, within SM_b20888at 1294.117 kb on - strand, within SM_b20888at 1294.117 kb on - strand, within SM_b20888at 1294.255 kb on + strand, within SM_b20888at 1294.256 kb on - strand, within SM_b20888at 1294.256 kb on - strand, within SM_b20888at 1294.256 kb on - strand, within SM_b20888at 1294.325 kb on - strand, within SM_b20888at 1294.325 kb on - strand, within SM_b20888at 1294.386 kb on + strand, within SM_b20888at 1294.386 kb on + strand, within SM_b20888at 1294.387 kb on - strand, within SM_b20888at 1294.387 kb on - strand, within SM_b20888at 1294.399 kb on - strand, within SM_b20888at 1294.518 kb on + strand, within SM_b20888at 1294.540 kb on + strand, within SM_b20888at 1294.540 kb on + strand, within SM_b20888at 1294.541 kb on - strand, within SM_b20888at 1294.545 kb on + strand, within SM_b20888at 1294.546 kb on - strand, within SM_b20888at 1294.731 kb on + strandat 1294.732 kb on - strandat 1294.732 kb on - strandat 1294.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,291,892 + SM_b20886 0.30 +0.7
1,291,892 + SM_b20886 0.30 +0.3
1,291,892 + SM_b20886 0.30 +0.7
1,291,892 + SM_b20886 0.30 +0.0
1,291,912 + SM_b20886 0.32 -1.1
1,291,912 + SM_b20886 0.32 +0.4
1,291,913 - SM_b20886 0.32 -0.3
1,291,913 - SM_b20886 0.32 -0.1
1,291,913 - SM_b20886 0.32 +0.7
1,291,915 + SM_b20886 0.32 +0.1
1,291,915 + SM_b20886 0.32 -0.1
1,291,915 + SM_b20886 0.32 -0.2
1,291,915 + SM_b20886 0.32 -0.0
1,291,916 - SM_b20886 0.32 -0.2
1,291,916 - SM_b20886 0.32 -0.0
1,291,916 - SM_b20886 0.32 -1.1
1,291,916 - SM_b20886 0.32 +0.2
1,291,916 - SM_b20886 0.32 +0.4
1,291,916 - SM_b20886 0.32 +0.3
1,291,916 - SM_b20886 0.32 -0.2
1,291,916 - SM_b20886 0.32 +0.5
1,291,957 + SM_b20886 0.35 -0.4
1,291,957 + SM_b20886 0.35 -0.5
1,291,958 - SM_b20886 0.35 +0.2
1,291,958 - SM_b20886 0.35 +0.7
1,292,038 + SM_b20886 0.41 +0.6
1,292,039 - SM_b20886 0.41 -0.5
1,292,128 + SM_b20886 0.47 +0.1
1,292,128 + SM_b20886 0.47 -2.2
1,292,166 + SM_b20886 0.50 -0.0
1,292,167 - SM_b20886 0.50 -0.1
1,292,167 - SM_b20886 0.50 -2.0
1,292,256 - SM_b20886 0.56 -0.4
1,292,365 - SM_b20886 0.64 -0.2
1,292,417 - SM_b20886 0.68 +0.3
1,292,417 - SM_b20886 0.68 -0.3
1,292,422 + SM_b20886 0.68 -0.2
1,292,446 + SM_b20886 0.70 -0.0
1,292,515 + SM_b20886 0.75 -1.2
1,292,515 + SM_b20886 0.75 -0.6
1,292,515 + SM_b20886 0.75 -0.1
1,292,516 - SM_b20886 0.75 +0.2
1,292,573 - SM_b20886 0.79 -1.1
1,292,653 + SM_b20886 0.84 +1.2
1,292,653 + SM_b20886 0.84 -0.3
1,292,653 + SM_b20886 0.84 +0.0
1,292,653 + SM_b20886 0.84 +0.3
1,292,654 - SM_b20886 0.85 -0.4
1,292,740 + -1.2
1,292,741 - +0.4
1,292,741 - +0.0
1,292,741 - -0.2
1,292,850 + +0.5
1,292,903 + -0.3
1,292,919 - +0.0
1,292,919 - -0.5
1,292,919 - +0.7
1,293,044 + SM_b20887 0.18 +1.2
1,293,342 + SM_b20887 0.49 -0.3
1,293,416 + SM_b20887 0.57 -0.1
1,293,416 + SM_b20887 0.57 -0.5
1,293,509 + SM_b20887 0.67 +1.2
1,293,509 + SM_b20887 0.67 +0.5
1,293,510 - SM_b20887 0.67 +0.3
1,293,510 - SM_b20887 0.67 +0.3
1,293,521 + SM_b20887 0.68 +0.0
1,293,521 + SM_b20887 0.68 -0.0
1,293,521 + SM_b20887 0.68 +0.6
1,293,522 - SM_b20887 0.69 +0.2
1,293,522 - SM_b20887 0.69 +0.2
1,293,522 - SM_b20887 0.69 +1.2
1,293,548 - SM_b20887 0.71 +0.6
1,293,596 + SM_b20887 0.76 +0.2
1,293,596 + SM_b20887 0.76 +0.2
1,293,602 + SM_b20887 0.77 +0.2
1,293,644 + SM_b20887 0.82 +0.5
1,293,722 - SM_b20887 0.90 +0.1
1,293,722 - SM_b20887 0.90 -4.2
1,293,735 + +0.0
1,293,743 + -1.3
1,293,744 - +0.7
1,293,744 - +0.4
1,293,809 + -0.2
1,293,810 - +1.2
1,293,810 - +0.1
1,293,810 - +0.2
1,293,832 - -4.4
1,293,838 - +0.3
1,293,838 - -0.3
1,293,838 - +0.3
1,293,864 + +0.1
1,293,864 + -0.1
1,293,865 - -0.2
1,293,883 + +0.8
1,293,888 + +0.6
1,293,888 + +0.2
1,293,888 + -1.5
1,293,888 + +1.8
1,293,888 + -1.3
1,293,889 - -0.3
1,293,987 + SM_b20888 0.19 -0.8
1,293,988 - SM_b20888 0.19 +0.3
1,294,054 + SM_b20888 0.27 -0.8
1,294,054 + SM_b20888 0.27 -0.2
1,294,055 - SM_b20888 0.27 +0.5
1,294,096 + SM_b20888 0.32 -0.0
1,294,097 - SM_b20888 0.32 -0.2
1,294,116 + SM_b20888 0.34 -0.1
1,294,116 + SM_b20888 0.34 +0.4
1,294,116 + SM_b20888 0.34 +0.9
1,294,116 + SM_b20888 0.34 +1.2
1,294,117 - SM_b20888 0.35 +0.2
1,294,117 - SM_b20888 0.35 -0.1
1,294,255 + SM_b20888 0.51 +0.0
1,294,256 - SM_b20888 0.52 -0.3
1,294,256 - SM_b20888 0.52 -1.2
1,294,256 - SM_b20888 0.52 -0.4
1,294,325 - SM_b20888 0.60 +0.3
1,294,325 - SM_b20888 0.60 -0.8
1,294,386 + SM_b20888 0.67 -0.5
1,294,386 + SM_b20888 0.67 -0.9
1,294,387 - SM_b20888 0.68 -0.2
1,294,387 - SM_b20888 0.68 -1.2
1,294,399 - SM_b20888 0.69 +0.2
1,294,518 + SM_b20888 0.84 -0.5
1,294,540 + SM_b20888 0.86 -0.8
1,294,540 + SM_b20888 0.86 +0.2
1,294,541 - SM_b20888 0.86 +0.8
1,294,545 + SM_b20888 0.87 -0.6
1,294,546 - SM_b20888 0.87 -0.5
1,294,731 + -0.6
1,294,732 - +0.4
1,294,732 - -0.4
1,294,803 + +0.2

Or see this region's nucleotide sequence