Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20612 and SM_b20613 are separated by 3 nucleotides SM_b20613 and SM_b20614 are separated by 124 nucleotides
SM_b20612: SM_b20612 - C4-dicarboxylate transport sensor protein, at 1,628,134 to 1,629,999
_b20612
SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385
_b20613
SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567
_b20614
Position (kb)
1630
1631
1632 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.162 kb on - strand, within SM_b20612 at 1629.162 kb on - strand, within SM_b20612 at 1629.165 kb on - strand, within SM_b20612 at 1629.165 kb on - strand, within SM_b20612 at 1629.413 kb on - strand, within SM_b20612 at 1629.421 kb on - strand, within SM_b20612 at 1629.928 kb on + strand at 1629.929 kb on - strand at 1630.249 kb on - strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.301 kb on - strand, within SM_b20613 at 1630.301 kb on - strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.910 kb on - strand, within SM_b20613 at 1630.912 kb on + strand, within SM_b20613 at 1631.057 kb on - strand, within SM_b20613 at 1631.203 kb on + strand, within SM_b20613 at 1631.204 kb on - strand, within SM_b20613 at 1631.335 kb on + strand at 1631.336 kb on - strand at 1631.336 kb on - strand at 1631.427 kb on - strand at 1631.511 kb on + strand at 1631.511 kb on + strand at 1631.779 kb on - strand, within SM_b20614 at 1631.779 kb on - strand, within SM_b20614 at 1631.960 kb on - strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.074 kb on - strand, within SM_b20614 at 1632.074 kb on - strand, within SM_b20614 at 1632.112 kb on + strand, within SM_b20614
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,629,161 + SM_b20612 0.55 -6.0 1,629,161 + SM_b20612 0.55 -3.5 1,629,161 + SM_b20612 0.55 -2.8 1,629,161 + SM_b20612 0.55 -4.2 1,629,162 - SM_b20612 0.55 -1.9 1,629,162 - SM_b20612 0.55 -4.0 1,629,165 - SM_b20612 0.55 -2.0 1,629,165 - SM_b20612 0.55 -3.2 1,629,413 - SM_b20612 0.69 -3.3 1,629,421 - SM_b20612 0.69 -3.5 1,629,928 + -3.7 1,629,929 - -4.6 1,630,249 - SM_b20613 0.18 -4.5 1,630,300 + SM_b20613 0.21 -1.1 1,630,300 + SM_b20613 0.21 -4.3 1,630,300 + SM_b20613 0.21 -2.7 1,630,301 - SM_b20613 0.22 -2.5 1,630,301 - SM_b20613 0.22 -4.5 1,630,909 + SM_b20613 0.66 -4.0 1,630,909 + SM_b20613 0.66 -4.1 1,630,910 - SM_b20613 0.66 -4.4 1,630,912 + SM_b20613 0.66 -4.4 1,631,057 - SM_b20613 0.76 -3.8 1,631,203 + SM_b20613 0.87 -2.9 1,631,204 - SM_b20613 0.87 -4.0 1,631,335 + -2.7 1,631,336 - -4.2 1,631,336 - -2.8 1,631,427 - -0.1 1,631,511 + +1.0 1,631,511 + +0.2 1,631,779 - SM_b20614 0.13 +0.0 1,631,779 - SM_b20614 0.13 -0.1 1,631,960 - SM_b20614 0.22 +0.4 1,632,073 + SM_b20614 0.27 +1.2 1,632,073 + SM_b20614 0.27 -0.7 1,632,073 + SM_b20614 0.27 -0.2 1,632,073 + SM_b20614 0.27 +0.6 1,632,073 + SM_b20614 0.27 +0.2 1,632,073 + SM_b20614 0.27 -0.1 1,632,074 - SM_b20614 0.27 -0.3 1,632,074 - SM_b20614 0.27 -0.1 1,632,112 + SM_b20614 0.29 +0.2
Or see this region's nucleotide sequence