Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20613

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20612 and SM_b20613 are separated by 3 nucleotidesSM_b20613 and SM_b20614 are separated by 124 nucleotides SM_b20612: SM_b20612 - C4-dicarboxylate transport sensor protein, at 1,628,134 to 1,629,999 _b20612 SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385 _b20613 SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567 _b20614 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1629.161 kb on + strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.162 kb on - strand, within SM_b20612at 1629.162 kb on - strand, within SM_b20612at 1629.165 kb on - strand, within SM_b20612at 1629.165 kb on - strand, within SM_b20612at 1629.413 kb on - strand, within SM_b20612at 1629.421 kb on - strand, within SM_b20612at 1629.928 kb on + strandat 1629.929 kb on - strandat 1630.249 kb on - strand, within SM_b20613at 1630.300 kb on + strand, within SM_b20613at 1630.300 kb on + strand, within SM_b20613at 1630.300 kb on + strand, within SM_b20613at 1630.301 kb on - strand, within SM_b20613at 1630.301 kb on - strand, within SM_b20613at 1630.909 kb on + strand, within SM_b20613at 1630.909 kb on + strand, within SM_b20613at 1630.910 kb on - strand, within SM_b20613at 1630.912 kb on + strand, within SM_b20613at 1631.057 kb on - strand, within SM_b20613at 1631.203 kb on + strand, within SM_b20613at 1631.204 kb on - strand, within SM_b20613at 1631.335 kb on + strandat 1631.336 kb on - strandat 1631.336 kb on - strandat 1631.427 kb on - strandat 1631.511 kb on + strandat 1631.511 kb on + strandat 1631.779 kb on - strand, within SM_b20614at 1631.779 kb on - strand, within SM_b20614at 1631.960 kb on - strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.074 kb on - strand, within SM_b20614at 1632.074 kb on - strand, within SM_b20614at 1632.112 kb on + strand, within SM_b20614

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,629,161 + SM_b20612 0.55 -6.0
1,629,161 + SM_b20612 0.55 -3.5
1,629,161 + SM_b20612 0.55 -2.8
1,629,161 + SM_b20612 0.55 -4.2
1,629,162 - SM_b20612 0.55 -1.9
1,629,162 - SM_b20612 0.55 -4.0
1,629,165 - SM_b20612 0.55 -2.0
1,629,165 - SM_b20612 0.55 -3.2
1,629,413 - SM_b20612 0.69 -3.3
1,629,421 - SM_b20612 0.69 -3.5
1,629,928 + -3.7
1,629,929 - -4.6
1,630,249 - SM_b20613 0.18 -4.5
1,630,300 + SM_b20613 0.21 -1.1
1,630,300 + SM_b20613 0.21 -4.3
1,630,300 + SM_b20613 0.21 -2.7
1,630,301 - SM_b20613 0.22 -2.5
1,630,301 - SM_b20613 0.22 -4.5
1,630,909 + SM_b20613 0.66 -4.0
1,630,909 + SM_b20613 0.66 -4.1
1,630,910 - SM_b20613 0.66 -4.4
1,630,912 + SM_b20613 0.66 -4.4
1,631,057 - SM_b20613 0.76 -3.8
1,631,203 + SM_b20613 0.87 -2.9
1,631,204 - SM_b20613 0.87 -4.0
1,631,335 + -2.7
1,631,336 - -4.2
1,631,336 - -2.8
1,631,427 - -0.1
1,631,511 + +1.0
1,631,511 + +0.2
1,631,779 - SM_b20614 0.13 +0.0
1,631,779 - SM_b20614 0.13 -0.1
1,631,960 - SM_b20614 0.22 +0.4
1,632,073 + SM_b20614 0.27 +1.2
1,632,073 + SM_b20614 0.27 -0.7
1,632,073 + SM_b20614 0.27 -0.2
1,632,073 + SM_b20614 0.27 +0.6
1,632,073 + SM_b20614 0.27 +0.2
1,632,073 + SM_b20614 0.27 -0.1
1,632,074 - SM_b20614 0.27 -0.3
1,632,074 - SM_b20614 0.27 -0.1
1,632,112 + SM_b20614 0.29 +0.2

Or see this region's nucleotide sequence