Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20453 and SM_b20454 are separated by 280 nucleotides SM_b20454 and SM_b20455 are separated by 104 nucleotides SM_b20455 and SM_b20456 are separated by 104 nucleotides SM_b20456 and SM_b20457 are separated by 80 nucleotides
SM_b20453: SM_b20453 - gluconolactonase, at 465,642 to 466,553
_b20453
SM_b20454: SM_b20454 - hypothetical protein, at 466,834 to 467,253
_b20454
SM_b20455: SM_b20455 - transcriptional regulator, at 467,358 to 467,972
_b20455
SM_b20456: SM_b20456 - dehydrogenasereductase, at 468,077 to 468,823
_b20456
SM_b20457: SM_b20457 - transcriptional regulator transcription regulator protein, at 468,904 to 470,052
_b20457
Position (kb) 467
468 Strain fitness (log2 ratio) -1
0
1
2
3 at 466.403 kb on + strand, within SM_b20453 at 466.471 kb on + strand at 466.535 kb on - strand at 466.641 kb on + strand at 466.641 kb on + strand at 466.641 kb on + strand at 466.642 kb on - strand at 466.673 kb on + strand at 466.673 kb on + strand at 466.673 kb on + strand at 466.674 kb on - strand at 466.674 kb on - strand at 466.674 kb on - strand at 466.722 kb on - strand at 466.808 kb on + strand at 466.808 kb on + strand at 466.809 kb on - strand at 466.973 kb on + strand, within SM_b20454 at 466.973 kb on + strand, within SM_b20454 at 466.974 kb on - strand, within SM_b20454 at 467.055 kb on - strand, within SM_b20454 at 467.055 kb on - strand, within SM_b20454 at 467.063 kb on - strand, within SM_b20454 at 467.176 kb on + strand, within SM_b20454 at 467.177 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.190 kb on - strand, within SM_b20454 at 467.213 kb on + strand at 467.213 kb on + strand at 467.214 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.340 kb on + strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.359 kb on + strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.431 kb on + strand, within SM_b20455 at 467.431 kb on + strand, within SM_b20455 at 467.472 kb on + strand, within SM_b20455 at 467.473 kb on - strand, within SM_b20455 at 467.483 kb on - strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.667 kb on - strand, within SM_b20455 at 467.680 kb on + strand, within SM_b20455 at 467.680 kb on + strand, within SM_b20455 at 467.801 kb on - strand, within SM_b20455 at 467.830 kb on + strand, within SM_b20455 at 467.890 kb on + strand, within SM_b20455 at 467.891 kb on - strand, within SM_b20455 at 467.973 kb on - strand at 467.979 kb on + strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 468.021 kb on + strand at 468.022 kb on - strand at 468.191 kb on + strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.343 kb on - strand, within SM_b20456 at 468.424 kb on + strand, within SM_b20456 at 468.425 kb on - strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.546 kb on - strand, within SM_b20456 at 468.716 kb on + strand, within SM_b20456 at 468.718 kb on - strand, within SM_b20456 at 468.858 kb on + strand at 468.858 kb on + strand at 468.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 466,403 + SM_b20453 0.83 -0.0 466,471 + -0.5 466,535 - -0.2 466,641 + -0.5 466,641 + -0.9 466,641 + -0.2 466,642 - +0.3 466,673 + -0.0 466,673 + -0.6 466,673 + -0.8 466,674 - +0.2 466,674 - -0.0 466,674 - +0.7 466,722 - -0.2 466,808 + +0.5 466,808 + -0.4 466,809 - +0.6 466,973 + SM_b20454 0.33 -0.1 466,973 + SM_b20454 0.33 -0.5 466,974 - SM_b20454 0.33 +0.8 467,055 - SM_b20454 0.53 +0.9 467,055 - SM_b20454 0.53 +0.7 467,063 - SM_b20454 0.55 +0.2 467,176 + SM_b20454 0.81 -0.2 467,177 - SM_b20454 0.82 -0.5 467,183 - SM_b20454 0.83 -0.1 467,183 - SM_b20454 0.83 +0.5 467,190 - SM_b20454 0.85 +0.2 467,213 + -1.1 467,213 + -0.4 467,214 - +1.4 467,294 - -0.5 467,294 - -0.3 467,294 - +0.4 467,340 + -0.2 467,341 - +0.4 467,341 - -0.5 467,341 - -0.5 467,359 + -0.2 467,360 - +0.1 467,360 - +0.3 467,360 - -0.5 467,360 - +0.3 467,431 + SM_b20455 0.12 +1.1 467,431 + SM_b20455 0.12 +0.0 467,472 + SM_b20455 0.19 +0.3 467,473 - SM_b20455 0.19 +0.3 467,483 - SM_b20455 0.20 -0.4 467,559 + SM_b20455 0.33 +1.0 467,559 + SM_b20455 0.33 +1.2 467,559 + SM_b20455 0.33 +0.7 467,667 - SM_b20455 0.50 +0.3 467,680 + SM_b20455 0.52 +0.5 467,680 + SM_b20455 0.52 -0.1 467,801 - SM_b20455 0.72 +0.6 467,830 + SM_b20455 0.77 +0.7 467,890 + SM_b20455 0.87 +2.8 467,891 - SM_b20455 0.87 +0.3 467,973 - -0.3 467,979 + +1.0 467,980 - +0.1 467,980 - +0.5 467,980 - -0.4 467,980 - -0.8 468,021 + -0.7 468,022 - -0.4 468,191 + SM_b20456 0.15 -0.3 468,192 - SM_b20456 0.15 -0.2 468,192 - SM_b20456 0.15 +0.9 468,342 + SM_b20456 0.35 +0.4 468,342 + SM_b20456 0.35 +0.4 468,342 + SM_b20456 0.35 -0.8 468,342 + SM_b20456 0.35 -0.0 468,343 - SM_b20456 0.36 -0.4 468,424 + SM_b20456 0.46 +0.3 468,425 - SM_b20456 0.47 -0.2 468,545 + SM_b20456 0.63 -0.7 468,545 + SM_b20456 0.63 +0.0 468,546 - SM_b20456 0.63 +0.9 468,716 + SM_b20456 0.86 -0.8 468,718 - SM_b20456 0.86 -0.8 468,858 + +0.7 468,858 + -0.7 468,859 - -0.2
Or see this region's nucleotide sequence